Navigation

  • Main page
  • Downloads
  • Getting Started
  • Recent changes
  • Random page
  • What links here
  • Related changes
  • Special pages
  • Printable version
  • Permanent link
  • Page information

personal-loginout

  • Log in
  • Not logged in
  • Talk
  • Contributions
  • Create account

Search

?

Navigation menu

Namespaces
  • Page
  • Discussion
English
From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Views
  • Read
  • Edit
  • History
  • Edit source

⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS03310 [old locus tag: NWMN_0578 ]
  • pan locus tag?: SAUPAN002472000
  • symbol: NWMN_RS03310
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS03310 [old locus tag: NWMN_0578 ]
  • symbol: NWMN_RS03310
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 659151..659534
  • length: 384
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (659151..659534) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0578

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    GTGTTGAAACAGCACAACGAAAAAGAAAAATTTGAATTTACTACTGAAGGAACTTGGCAA
    CAAAGGCAATCTAACTTTATTCGGTATGTAGAACAAATTGAGGATGCAACAGTTAATGTT
    ACAATAAAAGTGGATGATGATAGCGTTAAGTTGATTCGTAAAGGCGACATTAATATGAAT
    TTGCATTTTGTTGAAGGACAAACGACAACAACTTTTTACGATATATCGGCTGGACGAATT
    CCACTAGAAGTTAAAACATTACGCATTTTACATTTCGTAAGTGGAGACGGTGGCAAGCTA
    AAGATTCATTATGAATTATATCAAGATAATGAAAAAATGGGTTCTTATCAATATGAAATT
    AACTATAAGGAGATAGGCGAATGA
    60
    120
    180
    240
    300
    360
    384

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS03310 [old locus tag: NWMN_0578 ]
  • symbol: NWMN_RS03310
  • description: hypothetical protein
  • length: 127
  • theoretical pI: 5.25318
  • theoretical MW: 14927.7
  • GRAVY: -0.714961

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see NWMN_0578
  • ⊞PFAM:
    Calycin (CL0116) DUF1934; Domain of unknown function (DUF1934) (PF09148; HMM-score: 106.9)
    and 4 more
    DUF4488; Domain of unknown function (DUF4488) (PF14869; HMM-score: 15.4)
    EF_hand (CL0220) EF-hand_FSTL1; Follistatin-related protein 1, EF-hand domain pair (PF23564; HMM-score: 15.4)
    Gal_mutarotase (CL0103) AmyA-gluTrfs_C; Alpha-amylase/4-alpha-glucanotransferase, C-terminal (PF09095; HMM-score: 14.8)
    Cupin (CL0029) Cupin_3; EutQ-like cupin domain (PF05899; HMM-score: 13.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9847
    • Cytoplasmic Membrane Score: 0.0135
    • Cell wall & surface Score: 0.0009
    • Extracellular Score: 0.0009
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005257
    • TAT(Tat/SPI): 0.000591
    • LIPO(Sec/SPII): 0.001116
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: see NWMN_0578
  • RefSeq: WP_001819741 NCBI
  • UniProt: see NWMN_0578

⊟Protein sequence[edit | edit source]

  • MLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • ⊟interaction partners:
    NWMN_RS11780(deoA)pyrimidine-nucleoside phosphorylase  [1] (data from MRSA252)
    NWMN_RS10565(gatA)glutamyl-tRNA(Gln) amidotransferase subunit A  [1] (data from MRSA252)
    NWMN_RS00315peptidoglycan-binding protein LysM  [1] (data from MRSA252)
    NWMN_RS00885formate acetyltransferase  [1] (data from MRSA252)
    NWMN_RS02060peptidase  [1] (data from MRSA252)
    NWMN_RS02105alkyl hydroperoxide reductase subunit C  [1] (data from MRSA252)
    NWMN_RS0265550S ribosomal protein L25/general stress protein Ctc  [1] (data from MRSA252)
    NWMN_RS02905transcription termination/antitermination protein NusG  [1] (data from MRSA252)
    NWMN_RS0291550S ribosomal protein L1  [1] (data from MRSA252)
    NWMN_RS0292050S ribosomal protein L10  [1] (data from MRSA252)
    NWMN_RS0292550S ribosomal protein L7/L12  [1] (data from MRSA252)
    NWMN_RS0295530S ribosomal protein S7  [1] (data from MRSA252)
    NWMN_RS02960elongation factor G  [1] (data from MRSA252)
    NWMN_RS02965elongation factor Tu  [1] (data from MRSA252)
    NWMN_RS030753-hexulose-6-phosphate synthase  [1] (data from MRSA252)
    NWMN_RS03590hypothetical protein  [1] (data from MRSA252)
    NWMN_RS03640LysR family transcriptional regulator  [1] (data from MRSA252)
    NWMN_RS03695hypothetical protein  [1] (data from MRSA252)
    NWMN_RS04075ribosomal subunit interface protein  [1] (data from MRSA252)
    NWMN_RS04080preprotein translocase subunit SecA  [1] (data from MRSA252)
    NWMN_RS04200phosphoglycerate kinase  [1] (data from MRSA252)
    NWMN_RS04205triose-phosphate isomerase  [1] (data from MRSA252)
    NWMN_RS042102,3-bisphosphoglycerate-independent phosphoglycerate mutase  [1] (data from MRSA252)
    NWMN_RS04215enolase  [1] (data from MRSA252)
    NWMN_RS04380arsenate reductase  [1] (data from MRSA252)
    NWMN_RS04440ABC transporter ATP-binding protein  [1] (data from MRSA252)
    NWMN_RS04555D-alanine--poly(phosphoribitol) ligase subunit 2  [1] (data from MRSA252)
    NWMN_RS04590NADH dehydrogenase  [1] (data from MRSA252)
    NWMN_RS04700glucose-6-phosphate isomerase  [1] (data from MRSA252)
    NWMN_RS04730hypothetical protein  [1] (data from MRSA252)
    NWMN_RS04885oligoendopeptidase F  [1] (data from MRSA252)
    NWMN_RS04935enoyl-ACP reductase  [1] (data from MRSA252)
    NWMN_RS05220bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase  [1] (data from MRSA252)
    NWMN_RS05320phosphocarrier protein HPr  [1] (data from MRSA252)
    NWMN_RS05325phosphoenolpyruvate--protein phosphotransferase  [1] (data from MRSA252)
    NWMN_RS05380pyruvate dehydrogenase E1 component subunit alpha  [1] (data from MRSA252)
    NWMN_RS05385pyruvate dehydrogenase E1 component subunit beta  [1] (data from MRSA252)
    NWMN_RS05390dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex  [1] (data from MRSA252)
    NWMN_RS05395dihydrolipoyl dehydrogenase  [1] (data from MRSA252)
    NWMN_RS05970thiol reductase thioredoxin  [1] (data from MRSA252)
    NWMN_RS06210cell division protein FtsZ  [1] (data from MRSA252)
    NWMN_RS06245isoleucine--tRNA ligase  [1] (data from MRSA252)
    NWMN_RS06435beta-ketoacyl-ACP reductase  [1] (data from MRSA252)
    NWMN_RS0649050S ribosomal protein L19  [1] (data from MRSA252)
    NWMN_RS06515succinyl-CoA ligase subunit beta  [1] (data from MRSA252)
    NWMN_RS0657530S ribosomal protein S2  [1] (data from MRSA252)
    NWMN_RS06645translation initiation factor IF-2  [1] (data from MRSA252)
    NWMN_RS06840glutamine synthetase  [1] (data from MRSA252)
    NWMN_RS07390cold-shock protein CspA  [1] (data from MRSA252)
    NWMN_RS07455dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex  [1] (data from MRSA252)
    NWMN_RS074602-oxoglutarate dehydrogenase E1 component  [1] (data from MRSA252)
    NWMN_RS07785DNA-binding protein HU  [1] (data from MRSA252)
    NWMN_RS08130aminomethyltransferase  [1] (data from MRSA252)
    NWMN_RS08215superoxide dismutase  [1] (data from MRSA252)
    NWMN_RS08255RNA polymerase sigma factor SigA  [1] (data from MRSA252)
    NWMN_RS08275glycine--tRNA ligase  [1] (data from MRSA252)
    NWMN_RS08350molecular chaperone DnaK  [1] (data from MRSA252)
    NWMN_RS0838030S ribosomal protein S20  [1] (data from MRSA252)
    NWMN_RS0868550S ribosomal protein L21  [1] (data from MRSA252)
    NWMN_RS08795trigger factor  [1] (data from MRSA252)
    NWMN_RS08830translation initiation factor IF-3  [1] (data from MRSA252)
    NWMN_RS08840threonine--tRNA ligase  [1] (data from MRSA252)
    NWMN_RS08865aldehyde dehydrogenase  [1] (data from MRSA252)
    NWMN_RS08905isocitrate dehydrogenase (NADP(+))  [1] (data from MRSA252)
    NWMN_RS08930pyruvate kinase  [1] (data from MRSA252)
    NWMN_RS08970universal stress protein  [1] (data from MRSA252)
    NWMN_RS08995universal stress protein UspA  [1] (data from MRSA252)
    NWMN_RS0904530S ribosomal protein S4  [1] (data from MRSA252)
    NWMN_RS09185tRNA-binding protein  [1] (data from MRSA252)
    NWMN_RS09230dipeptidase PepV  [1] (data from MRSA252)
    NWMN_RS09310proline dehydrogenase  [1] (data from MRSA252)
    NWMN_RS09385transaldolase  [1] (data from MRSA252)
    NWMN_RS10520non-heme ferritin  [1] (data from MRSA252)
    NWMN_RS11175molecular chaperone GroEL  [1] (data from MRSA252)
    NWMN_RS11180co-chaperone GroES  [1] (data from MRSA252)
    NWMN_RS11485DEAD/DEAH box family ATP-dependent RNA helicase  [1] (data from MRSA252)
    NWMN_RS11495D-alanine--D-alanine ligase  [1] (data from MRSA252)
    NWMN_RS11655uracil phosphoribosyltransferase  [1] (data from MRSA252)
    NWMN_RS1169550S ribosomal protein L31 type B  [1] (data from MRSA252)
    NWMN_RS11715UDP-N-acetylglucosamine 1-carboxyvinyltransferase  [1] (data from MRSA252)
    NWMN_RS11720fructose-bisphosphate aldolase  [1] (data from MRSA252)
    NWMN_RS11795purine-nucleoside phosphorylase  [1] (data from MRSA252)
    NWMN_RS11800DNA starvation/stationary phase protection protein  [1] (data from MRSA252)
    NWMN_RS1226030S ribosomal protein S9  [1] (data from MRSA252)
    NWMN_RS1230030S ribosomal protein S11  [1] (data from MRSA252)
    NWMN_RS1233050S ribosomal protein L15  [1] (data from MRSA252)
    NWMN_RS1234030S ribosomal protein S5  [1] (data from MRSA252)
    NWMN_RS1235050S ribosomal protein L6  [1] (data from MRSA252)
    NWMN_RS1236550S ribosomal protein L5  [1] (data from MRSA252)
    NWMN_RS1237050S ribosomal protein L24  [1] (data from MRSA252)
    NWMN_RS1239050S ribosomal protein L16  [1] (data from MRSA252)
    NWMN_RS1239530S ribosomal protein S3  [1] (data from MRSA252)
    NWMN_RS1240050S ribosomal protein L22  [1] (data from MRSA252)
    NWMN_RS1240530S ribosomal protein S19  [1] (data from MRSA252)
    NWMN_RS1241050S ribosomal protein L2  [1] (data from MRSA252)
    NWMN_RS1241550S ribosomal protein L23  [1] (data from MRSA252)
    NWMN_RS1242050S ribosomal protein L4  [1] (data from MRSA252)
    NWMN_RS1242550S ribosomal protein L3  [1] (data from MRSA252)
    NWMN_RS14010pyruvate oxidase  [1] (data from MRSA252)
    NWMN_RS14295VOC family protein  [1] (data from MRSA252)
    NWMN_RS14370malate:quinone oxidoreductase  [1] (data from MRSA252)

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: no data available

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Jump up to: 1.000 1.001 1.002 1.003 1.004 1.005 1.006 1.007 1.008 1.009 1.010 1.011 1.012 1.013 1.014 1.015 1.016 1.017 1.018 1.019 1.020 1.021 1.022 1.023 1.024 1.025 1.026 1.027 1.028 1.029 1.030 1.031 1.032 1.033 1.034 1.035 1.036 1.037 1.038 1.039 1.040 1.041 1.042 1.043 1.044 1.045 1.046 1.047 1.048 1.049 1.050 1.051 1.052 1.053 1.054 1.055 1.056 1.057 1.058 1.059 1.060 1.061 1.062 1.063 1.064 1.065 1.066 1.067 1.068 1.069 1.070 1.071 1.072 1.073 1.074 1.075 1.076 1.077 1.078 1.079 1.080 1.081 1.082 1.083 1.084 1.085 1.086 1.087 1.088 1.089 1.090 1.091 1.092 1.093 1.094 1.095 1.096 1.097 1.098 1.099 1.100 Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
    Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
    J Proteome Res: 2011, 10(3);1139-50
    [PubMed:21166474] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=NWMN_RS03310&oldid=65512"
  • This page was last edited on 10 March 2016, at 18:05.
  • Privacy and Cookies
  • About AureoWiki
  • Imprint
We use Matomo for user statistics and cookies. Privacy and Cookies X
CancelTry again