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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS11800 [old locus tag: NWMN_2043 ]
  • pan locus tag?: SAUPAN005436000
  • symbol: NWMN_RS11800
  • pan gene symbol?: dps
  • synonym:
  • product: DNA starvation/stationary phase protection protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS11800 [old locus tag: NWMN_2043 ]
  • symbol: NWMN_RS11800
  • product: DNA starvation/stationary phase protection protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2260655..2261098
  • length: 444
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2260655..2261098) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_2043

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAGTAATCAACAAGATGTTGTAAAAGAATTGAATCAACAAGTAGCAAACTGGACAGTA
    GCTTACACAAAGCTACACAATTTCCACTGGTATGTGAAAGGGCCTAACTTCTTCTCATTA
    CACGTTAAATTTGAAGAATTATATAATGAAGCAAGCCAATATGTAGACGAATTAGCTGAA
    AGAATTTTAGCGGTAGGAGGAAACCCTGTAGGTACATTAACTGAATGCTTAGAGCAATCA
    ATTGTTAAAGAAGCTGCGAAAGGTTACTCTGCAGAACAAATGGTTGAAGAATTATCACAA
    GACTTCACAAATATCTCAAAACAATTAGAAAACGCAATCGAAATTGCTGGTAATGCTGGC
    GATGATGTATCAGAAGATATGTTTATAGGTATGCAAACATCAGTAGATAAACATAATTGG
    ATGTTTAAATCTTACTTAAGCTAA
    60
    120
    180
    240
    300
    360
    420
    444


⊟Protein[edit | edit source]

Protein Data Bank: 2D5K

⊟General[edit | edit source]

  • locus tag: NWMN_RS11800 [old locus tag: NWMN_2043 ]
  • symbol: NWMN_RS11800
  • description: DNA starvation/stationary phase protection protein
  • length: 147
  • theoretical pI: 4.29468
  • theoretical MW: 16691.5
  • GRAVY: -0.394558

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds bacterioferritin (TIGR00754; HMM-score: 17.9)
  • TheSEED: see NWMN_2043
  • PFAM:
    Ferritin (CL0044) Ferritin; Ferritin-like domain (PF00210; HMM-score: 113.2)
    and 9 more
    no clan defined DUF5856; Family of unknown function (DUF5856) (PF19174; HMM-score: 28.5)
    E-set (CL0159) Lipase_bact_N; Bacterial virulence factor lipase N-terminal (PF12262; HMM-score: 16)
    no clan defined AvrM-A; Flax-rust effector AvrM-A (PF18241; HMM-score: 15)
    DUF4455; Domain of unknown function (DUF4455) (PF14643; HMM-score: 13.3)
    BST2; Bone marrow stromal antigen 2 (PF16716; HMM-score: 13.3)
    TPR (CL0020) ARMC9_ARM; LisH domain-containing protein ARMC9, ARM repeats (PF21050; HMM-score: 12.7)
    no clan defined Rab5-bind; Rabaptin-like protein (PF09311; HMM-score: 12.3)
    GP68; Gp68-like predicted RNA polymerase component (PF17469; HMM-score: 12.1)
    ABC_tran_CTD; ABC transporter C-terminal domain (PF16326; HMM-score: 11.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8161
    • Cytoplasmic Membrane Score: 0.0039
    • Cell wall & surface Score: 0.0017
    • Extracellular Score: 0.1783
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004322
    • TAT(Tat/SPI): 0.000179
    • LIPO(Sec/SPII): 0.000538
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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