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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS12345 [old locus tag: NWMN_2136 ]
  • pan locus tag?: SAUPAN005686000
  • symbol: NWMN_RS12345
  • pan gene symbol?: rplR
  • synonym:
  • product: 50S ribosomal protein L18

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS12345 [old locus tag: NWMN_2136 ]
  • symbol: NWMN_RS12345
  • product: 50S ribosomal protein L18
  • replicon: chromosome
  • strand: -
  • coordinates: 2367843..2368202
  • length: 360
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2367843..2368202) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_2136

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGATCAGTAAAATTGATAAAAATAAAGTGCGTTTAAAAAGACATGCTCGTGTTCGTACT
    AACTTATCAGGTACAGCTGAAAAGCCACGTTTAAACGTATATCGTTCAAACAAGCATATC
    TACGCTCAAATTATTGATGATAATAAAGGCGTAACATTAGCTCAAGCTTCTTCAAAAGAC
    AGCGACATTGCTACTACAGCAACTAAAGTTGAATTAGCAACTAAAGTCGGTGAAGCAATT
    GCTAAAAAAGCTGCTGACAAAGGCATTAAAGAAATCGTATTTGACCGTGGAGGATATTTA
    TATCACGGACGTGTTAAAGCATTAGCTGAAGCAGCAAGAGAAAGCGGATTAGAATTTTAA
    60
    120
    180
    240
    300
    360

⊟Protein[edit | edit source]

  • 4WCE
    PDB
  • 4WF9
    PDB
  • 4WFA
    PDB
  • 4WFB
    PDB
  • 5HKV
    PDB
  • 5HL7
    PDB
  • 5LI0
    PDB
  • 5ND8
    PDB
  • 5ND9
    PDB
  • 5NRG
    PDB
  • 5TCU
    PDB
Protein Data Bank: 4WCE
Protein Data Bank: 4WF9
Protein Data Bank: 4WFA
Protein Data Bank: 4WFB
Protein Data Bank: 5HKV
Protein Data Bank: 5HL7
Protein Data Bank: 5LI0
Protein Data Bank: 5ND8
Protein Data Bank: 5ND9
Protein Data Bank: 5NRG
Protein Data Bank: 5TCU

⊟General[edit | edit source]

  • locus tag: NWMN_RS12345 [old locus tag: NWMN_2136 ]
  • symbol: NWMN_RS12345
  • description: 50S ribosomal protein L18
  • length: 119
  • theoretical pI: 10.6055
  • theoretical MW: 13096.9
  • GRAVY: -0.519328

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL18 (TIGR00060; HMM-score: 143.7)
  • TheSEED: see NWMN_2136
  • PFAM:
    S11_L18p (CL0267) Ribosomal_L18p; Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (PF00861; HMM-score: 159.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.3707
    • Cytoplasmic Membrane Score: 0
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.6292
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012961
    • TAT(Tat/SPI): 0.001666
    • LIPO(Sec/SPII): 0.002778
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 446546535 NCBI
  • RefSeq: WP_000623881 NCBI
  • UniProt: see NWMN_2136

⊟Protein sequence[edit | edit source]

  • MISKIDKNKVRLKRHARVRTNLSGTAEKPRLNVYRSNKHIYAQIIDDNKGVTLAQASSKDSDIATTATKVELATKVGEAIAKKAADKGIKEIVFDRGGYLYHGRVKALAEAARESGLEF

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • ⊟interaction partners:
    NWMN_RS00010DNA polymerase III subunit beta  [1] (data from MRSA252)
    NWMN_RS00885formate acetyltransferase  [1] (data from MRSA252)
    NWMN_RS00980L-lactate dehydrogenase  [1] (data from MRSA252)
    NWMN_RS013755'-nucleotidase, lipoprotein e(P4) family  [1] (data from MRSA252)
    NWMN_RS0202030S ribosomal protein S6  [1] (data from MRSA252)
    NWMN_RS02105alkyl hydroperoxide reductase subunit C  [1] (data from MRSA252)
    NWMN_RS02150IMP dehydrogenase  [1] (data from MRSA252)
    NWMN_RS02420ABC transporter substrate-binding protein  [1] (data from MRSA252)
    NWMN_RS0265550S ribosomal protein L25/general stress protein Ctc  [1] (data from MRSA252)
    NWMN_RS02690RNA-binding protein S1  [1] (data from MRSA252)
    NWMN_RS02715cysteine synthase  [1] (data from MRSA252)
    NWMN_RS02815pyridoxal 5'-phosphate synthase lyase subunit PdxS  [1] (data from MRSA252)
    NWMN_RS02905transcription termination/antitermination protein NusG  [1] (data from MRSA252)
    NWMN_RS0291550S ribosomal protein L1  [1] (data from MRSA252)
    NWMN_RS0292050S ribosomal protein L10  [1] (data from MRSA252)
    NWMN_RS0295530S ribosomal protein S7  [1] (data from MRSA252)
    NWMN_RS02960elongation factor G  [1] (data from MRSA252)
    NWMN_RS02965elongation factor Tu  [1] (data from MRSA252)
    NWMN_RS02995branched chain amino acid aminotransferase  [1] (data from MRSA252)
    NWMN_RS03300zinc-dependent alcohol dehydrogenase  [1] (data from MRSA252)
    NWMN_RS03425metal ABC transporter substrate-binding protein  [1] (data from MRSA252)
    NWMN_RS03640LysR family transcriptional regulator  [1] (data from MRSA252)
    NWMN_RS04075ribosomal subunit interface protein  [1] (data from MRSA252)
    NWMN_RS04195aldehyde dehydrogenase  [1] (data from MRSA252)
    NWMN_RS04200phosphoglycerate kinase  [1] (data from MRSA252)
    NWMN_RS042102,3-bisphosphoglycerate-independent phosphoglycerate mutase  [1] (data from MRSA252)
    NWMN_RS04215enolase  [1] (data from MRSA252)
    NWMN_RS04590NADH dehydrogenase  [1] (data from MRSA252)
    NWMN_RS04700glucose-6-phosphate isomerase  [1] (data from MRSA252)
    NWMN_RS04955hypothetical protein  [1] (data from MRSA252)
    NWMN_RS05325phosphoenolpyruvate--protein phosphotransferase  [1] (data from MRSA252)
    NWMN_RS05380pyruvate dehydrogenase E1 component subunit alpha  [1] (data from MRSA252)
    NWMN_RS05395dihydrolipoyl dehydrogenase  [1] (data from MRSA252)
    NWMN_RS05970thiol reductase thioredoxin  [1] (data from MRSA252)
    NWMN_RS06245isoleucine--tRNA ligase  [1] (data from MRSA252)
    NWMN_RS06445acyl carrier protein  [1] (data from MRSA252)
    NWMN_RS0647530S ribosomal protein S16  [1] (data from MRSA252)
    NWMN_RS06515succinyl-CoA ligase subunit beta  [1] (data from MRSA252)
    NWMN_RS0657530S ribosomal protein S2  [1] (data from MRSA252)
    NWMN_RS06840glutamine synthetase  [1] (data from MRSA252)
    NWMN_RS07390cold-shock protein CspA  [1] (data from MRSA252)
    NWMN_RS07610alanine dehydrogenase  [1] (data from MRSA252)
    NWMN_RS07785DNA-binding protein HU  [1] (data from MRSA252)
    NWMN_RS0780030S ribosomal protein S1  [1] (data from MRSA252)
    NWMN_RS08000phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)  [1] (data from MRSA252)
    NWMN_RS08350molecular chaperone DnaK  [1] (data from MRSA252)
    NWMN_RS0868550S ribosomal protein L21  [1] (data from MRSA252)
    NWMN_RS08795trigger factor  [1] (data from MRSA252)
    NWMN_RS0882050S ribosomal protein L20  [1] (data from MRSA252)
    NWMN_RS08830translation initiation factor IF-3  [1] (data from MRSA252)
    NWMN_RS08905isocitrate dehydrogenase (NADP(+))  [1] (data from MRSA252)
    NWMN_RS08930pyruvate kinase  [1] (data from MRSA252)
    NWMN_RS09000acetate kinase  [1] (data from MRSA252)
    NWMN_RS0904530S ribosomal protein S4  [1] (data from MRSA252)
    NWMN_RS09125formate--tetrahydrofolate ligase  [1] (data from MRSA252)
    NWMN_RS09225D-alanine aminotransferase  [1] (data from MRSA252)
    NWMN_RS09385transaldolase  [1] (data from MRSA252)
    NWMN_RS11175molecular chaperone GroEL  [1] (data from MRSA252)
    NWMN_RS11655uracil phosphoribosyltransferase  [1] (data from MRSA252)
    NWMN_RS11720fructose-bisphosphate aldolase  [1] (data from MRSA252)
    NWMN_RS12080Asp23/Gls24 family envelope stress response protein  [1] (data from MRSA252)
    NWMN_RS1226030S ribosomal protein S9  [1] (data from MRSA252)
    NWMN_RS1226550S ribosomal protein L13  [1] (data from MRSA252)
    NWMN_RS12295DNA-directed RNA polymerase subunit alpha  [1] (data from MRSA252)
    NWMN_RS1230530S ribosomal protein S13  [1] (data from MRSA252)
    NWMN_RS1233050S ribosomal protein L15  [1] (data from MRSA252)
    NWMN_RS1234030S ribosomal protein S5  [1] (data from MRSA252)
    NWMN_RS1235050S ribosomal protein L6  [1] (data from MRSA252)
    NWMN_RS1235530S ribosomal protein S8  [1] (data from MRSA252)
    NWMN_RS1236550S ribosomal protein L5  [1] (data from MRSA252)
    NWMN_RS1239530S ribosomal protein S3  [1] (data from MRSA252)
    NWMN_RS1240050S ribosomal protein L22  [1] (data from MRSA252)
    NWMN_RS1240530S ribosomal protein S19  [1] (data from MRSA252)
    NWMN_RS1241050S ribosomal protein L2  [1] (data from MRSA252)
    NWMN_RS1241550S ribosomal protein L23  [1] (data from MRSA252)
    NWMN_RS12705octopine dehydrogenase  [1] (data from MRSA252)
    NWMN_RS133202,3-bisphosphoglycerate-dependent phosphoglycerate mutase  [1] (data from MRSA252)
    NWMN_RS14105L-glutamate gamma-semialdehyde dehydrogenase  [1] (data from MRSA252)
    NWMN_RS14370malate:quinone oxidoreductase  [1] (data from MRSA252)
    NWMN_RS14555ornithine carbamoyltransferase  [1] (data from MRSA252)
    NWMN_RS14560arginine deiminase  [1] (data from MRSA252)

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: no data available

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Jump up to: 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 1.19 1.20 1.21 1.22 1.23 1.24 1.25 1.26 1.27 1.28 1.29 1.30 1.31 1.32 1.33 1.34 1.35 1.36 1.37 1.38 1.39 1.40 1.41 1.42 1.43 1.44 1.45 1.46 1.47 1.48 1.49 1.50 1.51 1.52 1.53 1.54 1.55 1.56 1.57 1.58 1.59 1.60 1.61 1.62 1.63 1.64 1.65 1.66 1.67 1.68 1.69 1.70 1.71 1.72 1.73 1.74 1.75 1.76 1.77 1.78 1.79 1.80 Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
    Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
    J Proteome Res: 2011, 10(3);1139-50
    [PubMed:21166474] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=NWMN_RS12345&oldid=92882"
  • This page was last edited on 11 March 2016, at 09:11.
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