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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 03-AUG-2016

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01274
  • pan locus tag?: SAUPAN003609000
  • symbol: SAOUHSC_01274
  • pan gene symbol?: glpP
  • synonym:
  • product: glycerol uptake operon antiterminator regulatory protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_01274
  • symbol: SAOUHSC_01274
  • product: glycerol uptake operon antiterminator regulatory protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1231327..1231869
  • length: 543
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Gene ID: 3919927 NCBI
  • RefSeq: YP_499807 NCBI
  • BioCyc: G1I0R-1192 BioCyc
  • MicrobesOnline: 1289721 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAATCAAGTGAATAACAACATATTGCCTGCTATAAGAAACATTAAAGATTTAGAGAAA
    CTGATTAAAACAGACTATAAAATGTGTGTGCTTCTAGATATGCATATAGGACATATAAAA
    AGTATTATGGAATTGCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATA
    AAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAA
    GGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACG
    ATTTTTAGAGTATTTATTATTGATAGTCAAGCATTGAAACGCAGTATAGATTTGATAAAA
    AAAGTTGAACCTGATTTTGTTGAAGTACTTCCAGGTGTTGCGAGTAAAGCGATTCATCAT
    ATTCAGAAAGAAACAAACACACAAGTCATTGCAGGTGGCCTAATTAATACAATAGATGAA
    GTCAATGAAGCTGTTAAAAATGGAGCGAAATATGTAACTACTAGTTATGATAAACTTTGG
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    543

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_01274
  • symbol: SAOUHSC_01274
  • description: glycerol uptake operon antiterminator regulatory protein
  • length: 180
  • theoretical pI: 9.59463
  • theoretical MW: 20449.9
  • GRAVY: -0.06

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Amino acid biosynthesis Histidine family 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (TIGR00007; EC 5.3.1.16; HMM-score: 18.8)
    Metabolism Amino acid biosynthesis Glutamate family 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (TIGR01182; EC 4.1.2.14,4.1.3.16; HMM-score: 16.3)
    Metabolism Energy metabolism Entner-Doudoroff 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (TIGR01182; EC 4.1.2.14,4.1.3.16; HMM-score: 16.3)
  • TheSEED  :
    • Glycerol-3-phosphate responsive antiterminator (mRNA-binding)
  • ⊞PFAM:
    TIM_barrel (CL0036) G3P_antiterm; Glycerol-3-phosphate responsive antiterminator (PF04309; HMM-score: 205.7)
    and 1 more
    His_biosynth; Histidine biosynthesis protein (PF00977; HMM-score: 19.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9155
    • Cytoplasmic Membrane Score: 0.0274
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0571
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.000785
    • TAT(Tat/SPI): 0.000073
    • LIPO(Sec/SPII): 0.000133
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 88195007 NCBI
  • RefSeq: YP_499807 NCBI
  • UniProt: Q2FYZ7 UniProt
  • STRING: 93061.SAOUHSC_01274 STRING

⊟Protein sequence[edit | edit source]

  • MNQVNNNILPAIRNIKDLEKLIKTDYKMCVLLDMHIGHIKSIMELLKQNHIECFIHIDLIKGLSHDEFASEFIIQQYKPKGIVSTKSKVIKKAKSLNTLTIFRVFIIDSQALKRSIDLIKKVEPDFVEVLPGVASKAIHHIQKETNTQVIAGGLINTIDEVNEAVKNGAKYVTTSYDKLW

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas [1] [2]
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • ⊟interaction partners:
    SAOUHSC_01683(dnaK)molecular chaperone DnaK  [3] (data from MRSA252)
    SAOUHSC_00799(eno)phosphopyruvate hydratase  [3] (data from MRSA252)
    SAOUHSC_00574(eutD)phosphotransacetylase  [3] (data from MRSA252)
    SAOUHSC_02117(gatA)aspartyl/glutamyl-tRNA amidotransferase subunit A  [3] (data from MRSA252)
    SAOUHSC_00519(rplA)50S ribosomal protein L1  [3] (data from MRSA252)
    SAOUHSC_02509(rplB)50S ribosomal protein L2  [3] (data from MRSA252)
    SAOUHSC_02511(rplD)50S ribosomal protein L4  [3] (data from MRSA252)
    SAOUHSC_02500(rplE)50S ribosomal protein L5  [3] (data from MRSA252)
    SAOUHSC_02496(rplF)50S ribosomal protein L6  [3] (data from MRSA252)
    SAOUHSC_00520(rplJ)50S ribosomal protein L10  [3] (data from MRSA252)
    SAOUHSC_00518(rplK)50S ribosomal protein L11  [3] (data from MRSA252)
    SAOUHSC_00521(rplL)50S ribosomal protein L7/L12  [3] (data from MRSA252)
    SAOUHSC_02478(rplM)50S ribosomal protein L13  [3] (data from MRSA252)
    SAOUHSC_02495(rplR)50S ribosomal protein L18  [3] (data from MRSA252)
    SAOUHSC_01211(rplS)50S ribosomal protein L19  [3] (data from MRSA252)
    SAOUHSC_01784(rplT)50S ribosomal protein L20  [3] (data from MRSA252)
    SAOUHSC_01757(rplU)50S ribosomal protein L21  [3] (data from MRSA252)
    SAOUHSC_02361(rpmE2)50S ribosomal protein L31 type B  [3] (data from MRSA252)
    SAOUHSC_01232(rpsB)30S ribosomal protein S2  [3] (data from MRSA252)
    SAOUHSC_02506(rpsC)30S ribosomal protein S3  [3] (data from MRSA252)
    SAOUHSC_01829(rpsD)30S ribosomal protein S4  [3] (data from MRSA252)
    SAOUHSC_02477(rpsI)30S ribosomal protein S9  [3] (data from MRSA252)
    SAOUHSC_02487(rpsM)30S ribosomal protein S13  [3] (data from MRSA252)
    SAOUHSC_02503(rpsQ)30S ribosomal protein S17  [3] (data from MRSA252)
    SAOUHSC_02508(rpsS)30S ribosomal protein S19  [3] (data from MRSA252)
    SAOUHSC_01234(tsf)elongation factor Ts  [3] (data from MRSA252)
    SAOUHSC_00069protein A  [3] (data from MRSA252)
    SAOUHSC_00187formate acetyltransferase  [3] (data from MRSA252)
    SAOUHSC_00206L-lactate dehydrogenase  [3] (data from MRSA252)
    SAOUHSC_00374inosine-5'-monophosphate dehydrogenase  [3] (data from MRSA252)
    SAOUHSC_00499pyridoxal biosynthesis lyase PdxS  [3] (data from MRSA252)
    SAOUHSC_00529elongation factor G  [3] (data from MRSA252)
    SAOUHSC_00530elongation factor Tu  [3] (data from MRSA252)
    SAOUHSC_00742ribonucleotide-diphosphate reductase subunit alpha  [3] (data from MRSA252)
    SAOUHSC_00767hypothetical protein  [3] (data from MRSA252)
    SAOUHSC_00795glyceraldehyde-3-phosphate dehydrogenase  [3] (data from MRSA252)
    SAOUHSC_00878hypothetical protein  [3] (data from MRSA252)
    SAOUHSC_00906hypothetical protein  [3] (data from MRSA252)
    SAOUHSC_01040pyruvate dehydrogenase complex, E1 component subunit alpha  [3] (data from MRSA252)
    SAOUHSC_01041pyruvate dehydrogenase complex, E1 component subunit beta  [3] (data from MRSA252)
    SAOUHSC_01042branched-chain alpha-keto acid dehydrogenase subunit E2  [3] (data from MRSA252)
    SAOUHSC_01043dihydrolipoamide dehydrogenase  [3] (data from MRSA252)
    SAOUHSC_01100thioredoxin  [3] (data from MRSA252)
    SAOUHSC_01150cell division protein FtsZ  [3] (data from MRSA252)
    SAOUHSC_01347aconitate hydratase  [3] (data from MRSA252)
    SAOUHSC_01416dihydrolipoamide succinyltransferase  [3] (data from MRSA252)
    SAOUHSC_01490DNA-binding protein HU  [3] (data from MRSA252)
    SAOUHSC_01794glyceraldehyde 3-phosphate dehydrogenase 2  [3] (data from MRSA252)
    SAOUHSC_01801isocitrate dehydrogenase  [3] (data from MRSA252)
    SAOUHSC_01806pyruvate kinase  [3] (data from MRSA252)
    SAOUHSC_01819hypothetical protein  [3] (data from MRSA252)
    SAOUHSC_01909S-adenosylmethionine synthetase  [3] (data from MRSA252)
    SAOUHSC_02108ferritin  [3] (data from MRSA252)
    SAOUHSC_02377pyrimidine-nucleoside phosphorylase  [3] (data from MRSA252)
    SAOUHSC_02399glucosamine--fructose-6-phosphate aminotransferase  [3] (data from MRSA252)
    SAOUHSC_02441alkaline shock protein 23  [3] (data from MRSA252)
    SAOUHSC_02849pyruvate oxidase  [3] (data from MRSA252)
    SAOUHSC_02860HMG-CoA synthase  [3] (data from MRSA252)

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

  • MicrobesOnline: SAOUHSC_01272 > mutL > SAOUHSC_01274

⊟Regulation[edit | edit source]

  • data available for JSNZ

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser:  [4] 
    Expression Data Browser
    ⊟Multi-gene expression profiles



    Click on any data point to display a description of the corresponding condition!

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: no data available

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
    A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
    Proteomics: 2015, 15(21);3648-61
    [PubMed:26224020] [WorldCat.org] [DOI] (I p)
  2. ↑ Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, Frank Schmidt
    A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.
    Sci Rep: 2017, 7(1);9718
    [PubMed:28887440] [WorldCat.org] [DOI] (I e)
  3. ↑ Jump up to: 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 3.12 3.13 3.14 3.15 3.16 3.17 3.18 3.19 3.20 3.21 3.22 3.23 3.24 3.25 3.26 3.27 3.28 3.29 3.30 3.31 3.32 3.33 3.34 3.35 3.36 3.37 3.38 3.39 3.40 3.41 3.42 3.43 3.44 3.45 3.46 3.47 3.48 3.49 3.50 3.51 3.52 3.53 3.54 3.55 3.56 3.57 Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
    Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
    J Proteome Res: 2011, 10(3);1139-50
    [PubMed:21166474] [WorldCat.org] [DOI] (I p)
  4. ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAOUHSC_01274&oldid=96889"
  • This page was last edited on 11 March 2016, at 10:17.
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