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NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_02033
- pan locus tag?: SAUPAN001695000
- symbol: SAOUHSC_02033
- pan gene symbol?: —
- synonym:
- product: phage tape measure protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAOUHSC_02033
- symbol: SAOUHSC_02033
- product: phage tape measure protein
- replicon: chromosome
- strand: -
- coordinates: 1937698..1941165
- length: 3468
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 3920485 NCBI
- RefSeq: YP_500528 NCBI
- BioCyc: G1I0R-1925 BioCyc
- MicrobesOnline: 1290484 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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3421GTGACGGAATATAAAATTAAAGCGACTATTGAAGCTAGTGTAGCCAAATTCAAAAGGCAA
ATTGATAGTGCGGTTAAGTCTGTGCAAAGATTTAAACGAGTAGCAGATCAAACTAAAGAT
GTTGAATTAAACGCTAACGATAAAAATTTACAAAAAACTATCAAAGTTGCTAAAAAGTCT
TTAGATGCCTTTAGTAACAAAAATGTAAAAGCTAAATTAGATGCTAGTATACAAGATTTA
CAACAAAAGGTACTAGAATCGAATTTTGAACTAGACAAACTAAACTCTAAAGAAGTTACA
CCAGAAGTTAAGTTGCAAAAACAAAAGTTGATTAAAGATATCGCTGAAACAGAAGCTAAA
TTATCAGAATTAGAAAAGAAACGTGTCAATATTGACGTCAATGCAGATAACAGTAAATTC
AATCGAGTGTTAAAAGTATCTAAAGCTAGTCTCGAAGCATTAAATAGGTCTAAAGCCAAA
GCTATTATAGACGTGGACAATGGTGTTGCTAACTCTAAAATCAAACGTACTAAAGAAGAA
CTTAAAAGTATTCCGAACAAAACTAGATCTCGACTTGATGTAGATACAGGGCTTTCTATA
CCAACTATTTATGCGTTTAAAAAATCATTAGACGCATTGCCGAACAAAAAAACAACAAAG
GTAGATGTCGATACTAATGGTTTAAAGAAAGCTTATGCCTACATAATAAAAGCAAATGAC
AATTTTCAAAGACAGATGGGGAATTTAGCTAATATGTTCCGTGTGTTCGGTACTGTAGGT
TCTAATATGGTTGGTGGATTACTTACATCATCTTTTAGTATCTTAATACCTGTAATAGCG
AGCGTAGTACCTGTAGTATTTGCGCTATTAAACGCTATCAAAGTGTTAACTGGTGGTGTA
CTTGCTTTAGGTGGTGCCGTAGCAATAGCGGGAGCAGGATTTGTAGCGTTTGGCGCAATG
GCTATCAGCGCTATAAAGATGCTTAATGATGGCACTTTACAAGCTAGCTCAGCAACAAAC
GAATACAAAAAAGCGTTAGATGGCGTAAAGTCAGCATGGACTGATATTATAAAGCAAAAT
CAATCCGCTATCTTCACAACTCTTGCAAATGGTTTAAATACTGTTAAAACTGCAATGCAG
AGCTTACAACCGTTTTTTAGTGGTATTTCAAGAGGAATGGAAGAAGCGTCTCAAAGCGTG
CTTAAATGGGCTGAAAATAGCAGTGTAGCTTCAAGATTCTTTAATATGATGAATACAACG
GGTGTTTCGGTATTTAACAAGCTATTAAGTGCTGCAGGTGGTTTTGGTGACGGATTAGTC
AATGTATTCACGCAATTAGCACCACTGTTTCAATGGTCGGCTGATTGGTTGGATAGATTA
GGTCAATCTTTCTCTAACTGGGCTAATAGTGCAGCTGGAGAAAATTCGATAACTCGTTTT
ATTGAATACACAAAAACAAACTTACCTATCATTGGTAATATTTTCAAAAATGTTTTCGTT
GGAATTAACAATTTGATGAATGCATTCAGCGGATCATCAACTGGCATATTCCAATCTCTT
GAACAAATGACAGCTAAGTTTAGGGAATGGTCTGAACAAGTAGGACAATCTCAAGGGTTT
AAAGACTTTGTCAGTTATATACAAACAAATGGACCACTAATAATGCAATTGATTGGAAAC
ATCGCAAGAGGATTAGTTGCATTCGCAACAGCAATGGCTCCTATAGCTAGTGCAGTATTA
CGCGTTGCAGTTGCAATAACTGGTTGGATAGCTAACTTGTTTGAGGCGCATCCAGCTACA
GCACAATTAGTTGGTGTCATTATAACTTTAGTTGGTGCATTTAGATTTTTAATACCGATT
ATTCTTGCTGTATCTAACTTTATGGGTGGCGGATTAATAGGTAGAATCATTGCATTAGTA
AGTAAGTTCGGTTTATTAAGAGCGGGATTAACAATTTTAAAAGGTGCGTTCATGTTATTA
AAAGGACCATTAAAAATTATATCAGTTATATTCCAATTGTTATTCGGTAAGATTGGATTA
ATTAGAAATGCTATCACAGGACTAGTAACTGTGTTTGGTATTTTAGGCGGTCCAATAACA
ATAGTAATTGGTGTAATTGCTGCATTAATAGCTATATTCGTTTTATTGTGGAATAAAAAT
GAAGGATTCAGAAACTTTATTATAAATGCTTGGAATGCGATAAAAACGTTTATGGTTAAT
GTTTGGAATGTATTAAAAGCTGTAGCTTCGGTTGTATGGAATGCTATTTTAACAGCTATC
ACTACAGCAGTATCGAATGTTTACAATTTTATAATGATTGTTTGGAATCAAATAGTCGCT
TATTTACAAGGGCTATGGAATGGAATTATCGCTATTGCAACAACAGTATGGAACCTTTTA
GTTACAATCATTACAACTGTTTTCACGACGATAATGACAATAGTTATGACGATATGGACA
GCTATTTGGACGTTCTTAAGTACAATCTGGAATACGATAATTACAATCGCTACTACGATT
TGGAATTTGTTAGTCACTGTAATAACTACAGTGTTTACCACAATTATGACTATCGCAATA
ACAATTTGGAACGCTATTTGGACGTTCTTACAAACGTTGTGGAACACTATAGTTACTGTG
GCAACTAAGGTTTGGAACGCTATCACTACAGCTATATCTACTGCGTTACAAGCGGCATGG
AGTTTTATTTCTAATATATGGAATACGATTTGGAGTTTCTTATCTGGTATATTAACGACA
ATTTGGAATAAAGTTGTAAGCATATTCACACAAGTTGTTTCAACTATATCAGACAAAATG
TCTCAAGCTTGGAACTTCATTGTCACTAAAGGTATGCAATGGGTATCTACTATAACAAGT
ACGCTAATTAACTTTGTTAATAGAGTTGTTCAAGGATTCGTTAATGTTGTAAACAAAGTT
AGTCAAGGTATGACAAATGCAGTAAATAAAGTTAAAAGCTTTGTGGATGACTTTGTATCA
GCAGGTGCTGATATGATCCGTGGTTTGATGAGAGGTATTGGTAATATGGCTAGAGACTTA
GCTGAAAAAGCAGCTAGTGTAGCAAAAGGTGCTTTAAATGCAGCCAAAAGAGCGCTAGGT
ATTCACTCACCTTCACGTGAATTCATGGATGTTGGTATGTATTCAATGTTAGGTTTCGTT
AAAGGTATAGATAATCATTCAAGTAAAGTTATCCGTAATGTTTCTAATGTTGCAGATAAA
GTAGTTGATGCATTTCAACCTACATTAAACGCACCTGACATTTCTAGTATTACAGGAAAC
TTAAGTAATTTAGGTGGAAATATAAATGCGCAAGTACAACACACACATTCTATTGAAACA
TCACCGAACATGAAAACTGTTAAAGTTGAATTCGATGTCAATAACGATGCGCTTACTAGT
ATTGTTAACGGCAGAAATGCTAAACGCAATTCTGAGTATTACTTATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_02033
- symbol: SAOUHSC_02033
- description: phage tape measure protein
- length: 1155
- theoretical pI: 10.6508
- theoretical MW: 125813
- GRAVY: 0.325368
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 14
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.007595
- TAT(Tat/SPI): 0.000694
- LIPO(Sec/SPII): 0.001455
- predicted transmembrane helices (TMHMM): 13
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTEYKIKATIEASVAKFKRQIDSAVKSVQRFKRVADQTKDVELNANDKNLQKTIKVAKKSLDAFSNKNVKAKLDASIQDLQQKVLESNFELDKLNSKEVTPEVKLQKQKLIKDIAETEAKLSELEKKRVNIDVNADNSKFNRVLKVSKASLEALNRSKAKAIIDVDNGVANSKIKRTKEELKSIPNKTRSRLDVDTGLSIPTIYAFKKSLDALPNKKTTKVDVDTNGLKKAYAYIIKANDNFQRQMGNLANMFRVFGTVGSNMVGGLLTSSFSILIPVIASVVPVVFALLNAIKVLTGGVLALGGAVAIAGAGFVAFGAMAISAIKMLNDGTLQASSATNEYKKALDGVKSAWTDIIKQNQSAIFTTLANGLNTVKTAMQSLQPFFSGISRGMEEASQSVLKWAENSSVASRFFNMMNTTGVSVFNKLLSAAGGFGDGLVNVFTQLAPLFQWSADWLDRLGQSFSNWANSAAGENSITRFIEYTKTNLPIIGNIFKNVFVGINNLMNAFSGSSTGIFQSLEQMTAKFREWSEQVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIANLFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLRAGLTILKGAFMLLKGPLKIISVIFQLLFGKIGLIRNAITGLVTVFGILGGPITIVIGVIAALIAIFVLLWNKNEGFRNFIINAWNAIKTFMVNVWNVLKAVASVVWNAILTAITTAVSNVYNFIMIVWNQIVAYLQGLWNGIIAIATTVWNLLVTIITTVFTTIMTIVMTIWTAIWTFLSTIWNTIITIATTIWNLLVTVITTVFTTIMTIAITIWNAIWTFLQTLWNTIVTVATKVWNAITTAISTALQAAWSFISNIWNTIWSFLSGILTTIWNKVVSIFTQVVSTISDKMSQAWNFIVTKGMQWVSTITSTLINFVNRVVQGFVNVVNKVSQGMTNAVNKVKSFVDDFVSAGADMIRGLMRGIGNMARDLAEKAASVAKGALNAAKRALGIHSPSREFMDVGMYSMLGFVKGIDNHSSKVIRNVSNVADKVVDAFQPTLNAPDISSITGNLSNLGGNINAQVQHTHSIETSPNMKTVKVEFDVNNDALTSIVNGRNAKRNSEYYL
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- predicted SigA promoter [1] : S810 < SAOUHSC_02019 < SAOUHSC_02020 < SAOUHSC_02021 < SAOUHSC_02022 < SAOUHSC_02023 < SAOUHSC_02025 < SAOUHSC_02026 < SAOUHSC_02027 < SAOUHSC_02028 < SAOUHSC_02029 < SAOUHSC_02030 < SAOUHSC_02031 < SAOUHSC_02033 < SAOUHSC_02034 < SAOUHSC_02035 < SAOUHSC_02036 < SAOUHSC_02037 < SAOUHSC_02038 < SAOUHSC_02040 < SAOUHSC_02041 < SAOUHSC_02042 < SAOUHSC_02043 < SAOUHSC_02044 < S811 < SAOUHSC_02046 < SAOUHSC_02047 < SAOUHSC_02048 < SAOUHSC_02049 < SAOUHSC_02050 < S812 < SAOUHSC_02051 < SAOUHSC_02052 < SAOUHSC_02053 < SAOUHSC_02054 < SAOUHSC_02055 < SAOUHSC_02056 < SAOUHSC_02057 < SAOUHSC_02058 < SAOUHSC_02059 < SAOUHSC_02060 < SAOUHSC_02061 < SAOUHSC_02062 < SAOUHSC_02063 < SAOUHSC_02064 < SAOUHSC_02065 < SAOUHSC_02066 < SAOUHSC_02067 < SAOUHSC_02068 < SAOUHSC_02069 < SAOUHSC_02070 < SAOUHSC_02071 < S813 < SAOUHSC_02072 < SAOUHSC_02073 < SAOUHSC_02074 < SAOUHSC_02075 < SAOUHSC_02076 < SAOUHSC_02077 < SAOUHSC_02078 < SAOUHSC_02079 < SAOUHSC_02080 < S816 < SAOUHSC_02081 < SAOUHSC_02083
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: [1]
Multi-gene expression profiles
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ 1.0 1.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)