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NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_02051
- pan locus tag?: SAUPAN001719000
- symbol: SAOUHSC_02051
- pan gene symbol?: rinA
- synonym:
- product: int gene activator RinA
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAOUHSC_02051
- symbol: SAOUHSC_02051
- product: int gene activator RinA
- replicon: chromosome
- strand: -
- coordinates: 1950673..1951095
- length: 423
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 3920501 NCBI
- RefSeq: YP_500544 NCBI
- BioCyc: G1I0R-1941 BioCyc
- MicrobesOnline: 1290500 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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421ATGACTAAAAAGAAATACGGATTAAAATTATCAACAGTTCGAAAGTTAGAAGATGAGTTG
TGTGATTATCCTAATTATCATAAACAACTTGAAGATTTAAGAAGTGAAATAATGACACCG
TGGATTCCAACAGATACAAATATAGGCGGGGAGTTTGTACCGTCTAATACATCGAAAACA
GAAATGGCAGTAACTAATTATCTTTGTAGTATACGAAGAGGTAAAATCCTTGAGTTTAAG
AGCGCTATTGAACGTATAATCAACACATCAAGCAGGAAAGAACGCGAATTCATTCAAGAG
TATTATTTTAATAAAAAGGAATTAGTGAAAGTTTGTGTTGACATACACATTTCTGATAGA
ACTGCTCATAGAATCAAAAGAAAAATCATATCTAGATTGGCGGAAGAGTTAGGGGAAGAC
TGA60
120
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420
423
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_02051
- symbol: SAOUHSC_02051
- description: int gene activator RinA
- length: 140
- theoretical pI: 9.10204
- theoretical MW: 16473.9
- GRAVY: -0.665
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage transcriptional regulator, RinA family (TIGR01636; HMM-score: 205.8)Regulatory functions DNA interactions phage transcriptional regulator, RinA family (TIGR01636; HMM-score: 205.8)and 6 moreMobile and extrachromosomal element functions Prophage functions phage transcriptional regulator, ArpU family (TIGR01637; HMM-score: 27.8)Regulatory functions DNA interactions phage transcriptional regulator, ArpU family (TIGR01637; HMM-score: 27.8)RNA polymerase sigma factor, sigma-70 family (TIGR02937; HMM-score: 23.9)RNA polymerase sigma-70 factor, sigma-B/F/G subfamily (TIGR02980; HMM-score: 18)Cellular processes Sporulation and germination RNA polymerase sigma-F factor (TIGR02885; HMM-score: 16.4)Transcription Transcription factors RNA polymerase sigma-F factor (TIGR02885; HMM-score: 16.4)
- TheSEED :
- Phage integrase regulator RinA
- PFAM: HTH (CL0123) DUF1492; Protein of unknown function (DUF1492) (PF07374; HMM-score: 19.4)Sigma70_r4; Sigma-70, region 4 (PF04545; HMM-score: 17.5)and 2 moreEF_hand (CL0220) Ca_chan_IQ; Voltage gated calcium channel IQ domain (PF08763; HMM-score: 13.8)SOCS_box (CL0642) VHL_C; VHL box domain (PF17211; HMM-score: 12.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.024404
- TAT(Tat/SPI): 0.00058
- LIPO(Sec/SPII): 0.002147
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTKKKYGLKLSTVRKLEDELCDYPNYHKQLEDLRSEIMTPWIPTDTNIGGEFVPSNTSKTEMAVTNYLCSIRRGKILEFKSAIERIINTSSRKEREFIQEYYFNKKELVKVCVDIHISDRTAHRIKRKIISRLAEELGED
⊟Experimental data[edit | edit source]
- experimentally validated: PeptideAtlas [1] [2]
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- predicted SigA promoter [3] : S810 < SAOUHSC_02019 < SAOUHSC_02020 < SAOUHSC_02021 < SAOUHSC_02022 < SAOUHSC_02023 < SAOUHSC_02025 < SAOUHSC_02026 < SAOUHSC_02027 < SAOUHSC_02028 < SAOUHSC_02029 < SAOUHSC_02030 < SAOUHSC_02031 < SAOUHSC_02033 < SAOUHSC_02034 < SAOUHSC_02035 < SAOUHSC_02036 < SAOUHSC_02037 < SAOUHSC_02038 < SAOUHSC_02040 < SAOUHSC_02041 < SAOUHSC_02042 < SAOUHSC_02043 < SAOUHSC_02044 < S811 < SAOUHSC_02046 < SAOUHSC_02047 < SAOUHSC_02048 < SAOUHSC_02049 < SAOUHSC_02050 < S812 < SAOUHSC_02051 < SAOUHSC_02052 < SAOUHSC_02053 < SAOUHSC_02054 < SAOUHSC_02055 < SAOUHSC_02056 < SAOUHSC_02057 < SAOUHSC_02058 < SAOUHSC_02059 < SAOUHSC_02060 < SAOUHSC_02061 < SAOUHSC_02062 < SAOUHSC_02063 < SAOUHSC_02064 < SAOUHSC_02065 < SAOUHSC_02066 < SAOUHSC_02067 < SAOUHSC_02068 < SAOUHSC_02069 < SAOUHSC_02070 < SAOUHSC_02071 < S813 < SAOUHSC_02072 < SAOUHSC_02073 < SAOUHSC_02074 < SAOUHSC_02075 < SAOUHSC_02076 < SAOUHSC_02077 < SAOUHSC_02078 < SAOUHSC_02079 < SAOUHSC_02080 < S816 < SAOUHSC_02081 < SAOUHSC_02083
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: [3]
Multi-gene expression profiles
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
Proteomics: 2015, 15(21);3648-61
[PubMed:26224020] [WorldCat.org] [DOI] (I p) - ↑ Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, Frank Schmidt
A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.
Sci Rep: 2017, 7(1);9718
[PubMed:28887440] [WorldCat.org] [DOI] (I e) - ↑ 3.0 3.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)