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NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_02047
- pan locus tag?: SAUPAN001684000
- symbol: SAOUHSC_02047
- pan gene symbol?: —
- synonym:
- product: phage head morphogenesis protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAOUHSC_02047
- symbol: SAOUHSC_02047
- product: phage head morphogenesis protein
- replicon: chromosome
- strand: -
- coordinates: 1946234..1947229
- length: 996
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 3920497 NCBI
- RefSeq: YP_500540 NCBI
- BioCyc: G1I0R-1937 BioCyc
- MicrobesOnline: 1290496 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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961TTGCCTAACAAAAACACTCAAGAATATTGGGAAGAACGCGGACGCAAAGCAATCGAGAAT
GAGTTGAAGCGTGATAAAACTAAAGCTGAAGAAATAGAACGTATATTGAATATGATGATT
AAGCGCATTGAAAAAGAGATCAATGCGTTTATTGTCAAGTACGGAGATTTTGCAGGCGTT
ACATTACAAGAAGCACAAAAGATTATTGATGAGTTCGATGTAAAAGCGTTTCAAGAAGAA
GCAAAAAGATTGGTCGAAAACAAGGAGTTTAGCGATAGAGCAAATGAAGAATTAAAGAAG
TATAACACGAAAATGTATGTATCTAGAGAACAGATGTTAAAGATTCAAATAGAATTCTTA
ATTGCTTATGCAACAGCTCAAACAGAATTATCGATGAGGGAATATTTCGAATCAACAGCT
TATCGTGTGTTCAGTGATCAAGCGGGTATTTTAGGTGAAGGTGTACAAGTAGCTAAAGAA
GTTATAGATACAATCGTTGATACACAATTTCATGGTGTCGTTTGGTCAGAGCGATTATGG
ACTAATACCGAAGCAATGAAACAAGAAGTAGAAGAAATAATTGCTAATGTAGTTATTAGA
GGTCGACATCCTAATGAATATGTTAAAGATATGCGCAAGCACTTAAATAAATTCGAAGGC
ACAGCACGACAAAAGACCGCAGCAATTAAATCATTGCTTTATACGGAATCGGCACGTGTT
CACGCACAATCAAGCATTGACAGCATGAAAGAAATTTCACCGGAAGGATATTATATGTAT
ATTGCAAAAATCGATAATAGAACAACTAAAGTATGCAAAGGGCTTAATGGAGAAATATTC
AAAGTTAAAGACGCTAAAATTGGTGTTAATTTCTATCCTATGCATATCAATTGTCGTTCA
GATTGCGCTTTACTACCTAAATCTATGTGGCCGAAAAAACCAAGCAAGAAACGAAAAACA
AAATACTTCGGAGGGAAAGTGAAAAGCGGTGATTGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_02047
- symbol: SAOUHSC_02047
- description: phage head morphogenesis protein
- length: 331
- theoretical pI: 9.46951
- theoretical MW: 38492
- GRAVY: -0.659517
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage head morphogenesis protein, SPP1 gp7 family (TIGR01641; HMM-score: 136.4)
- TheSEED :
- Phage minor head protein
- PFAM: no clan defined Phage_Mu_F; Phage Mu protein F like protein (PF04233; HMM-score: 46.9)and 2 more6PGD_C (CL0106) Octopine_DH; NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain (PF02317; HMM-score: 14.9)no clan defined DUF99; Protein of unknown function DUF99 (PF01949; HMM-score: 10.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003348
- TAT(Tat/SPI): 0.000304
- LIPO(Sec/SPII): 0.000487
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MPNKNTQEYWEERGRKAIENELKRDKTKAEEIERILNMMIKRIEKEINAFIVKYGDFAGVTLQEAQKIIDEFDVKAFQEEAKRLVENKEFSDRANEELKKYNTKMYVSREQMLKIQIEFLIAYATAQTELSMREYFESTAYRVFSDQAGILGEGVQVAKEVIDTIVDTQFHGVVWSERLWTNTEAMKQEVEEIIANVVIRGRHPNEYVKDMRKHLNKFEGTARQKTAAIKSLLYTESARVHAQSSIDSMKEISPEGYYMYIAKIDNRTTKVCKGLNGEIFKVKDAKIGVNFYPMHINCRSDCALLPKSMWPKKPSKKRKTKYFGGKVKSGD
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SAOUHSC_02047 < SAOUHSC_02048 < SAOUHSC_02049 < SAOUHSC_02050predicted SigA promoter [1] : S810 < SAOUHSC_02019 < SAOUHSC_02020 < SAOUHSC_02021 < SAOUHSC_02022 < SAOUHSC_02023 < SAOUHSC_02025 < SAOUHSC_02026 < SAOUHSC_02027 < SAOUHSC_02028 < SAOUHSC_02029 < SAOUHSC_02030 < SAOUHSC_02031 < SAOUHSC_02033 < SAOUHSC_02034 < SAOUHSC_02035 < SAOUHSC_02036 < SAOUHSC_02037 < SAOUHSC_02038 < SAOUHSC_02040 < SAOUHSC_02041 < SAOUHSC_02042 < SAOUHSC_02043 < SAOUHSC_02044 < S811 < SAOUHSC_02046 < SAOUHSC_02047 < SAOUHSC_02048 < SAOUHSC_02049 < SAOUHSC_02050 < S812 < SAOUHSC_02051 < SAOUHSC_02052 < SAOUHSC_02053 < SAOUHSC_02054 < SAOUHSC_02055 < SAOUHSC_02056 < SAOUHSC_02057 < SAOUHSC_02058 < SAOUHSC_02059 < SAOUHSC_02060 < SAOUHSC_02061 < SAOUHSC_02062 < SAOUHSC_02063 < SAOUHSC_02064 < SAOUHSC_02065 < SAOUHSC_02066 < SAOUHSC_02067 < SAOUHSC_02068 < SAOUHSC_02069 < SAOUHSC_02070 < SAOUHSC_02071 < S813 < SAOUHSC_02072 < SAOUHSC_02073 < SAOUHSC_02074 < SAOUHSC_02075 < SAOUHSC_02076 < SAOUHSC_02077 < SAOUHSC_02078 < SAOUHSC_02079 < SAOUHSC_02080 < S816 < SAOUHSC_02081 < SAOUHSC_02083
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: [1]
Multi-gene expression profiles
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ 1.0 1.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)