PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

⊟Summary

• organism: Staphylococcus aureus Newman
• locus tag: NWMN_1017 [new locus tag: NWMN_RS05760 ]
• pan locus tag^?: SAUPAN001684000
• symbol: NWMN_1017
• pan gene symbol^?: —
• synonym:
• product: phage head morphogenesis protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_1017 [new locus tag: NWMN_RS05760 ]
• symbol: NWMN_1017
• product: phage head morphogenesis protein
• replicon: chromosome
• strand: +
• coordinates: 1118746..1119741
• length: 996
• essential: unknown other strains

⊟Accession numbers

• Gene ID: 5330621 NCBI
• RefSeq: YP_001332051 NCBI
• BioCyc:
• MicrobesOnline: 3706568 MicrobesOnline

⊟Phenotype

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⊟DNA sequence

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  TTGCCTAACAAAAACACTCAAGAATATTGGGAAGAACGCGGACGCAAAGCAATCGAGAAT
  GAGTTGAAGCGTGATAAAACTAAAGCTGAAGAAATAGAACGTATATTGAATATGATGATT
  AAGCGCATTGAAAAAGAAATCAATGCGTTTATTGTTAAGTACGGAGATTTTGCAGGCGTT
  ACATTACAAGAAGCACAAAAGATTATTGATGAGTTCGATGTAAAAGCGTTTCAAGAAGAA
  GCAAAAAGATTGGTCGAAAACAAGGACTTTAGCGATAGAGCAAATGAAGAATTAAAGAAG
  TATAACACTAAGATGTATGTATCTAGAGAACAGATATTAAAGATTCAAATAGAATTCTTA
  ATTGCTTATGCAACAGCTCAAACAGAATTATCGATGAGGGAATATTTCGAATCAACAGCT
  TATCGTGTGTTCAGTGATCAAGCGGGTATTTTAGGTGAAGGTGTACAAGTAGCTAAAGAA
  GTTATAGATACAATCGTTGATACACAATTTCATGGTGTCGTTTGGTCAGAGCGATTATGG
  ACTAATACCGAAGCAATGAAACAAGAAGTAGAAGAAATAATTGCTAATGTAGTTATTAGA
  GGTCGACATCCTAATGAATATGTTAAAGATATGCGCAAGCACTTAAATAAATTCGAAGGC
  ACAGCACGACAAAAGACCGCAGCAATTAAATCATTGCTTTATACGGAATCGGCACGTGTT
  CACGCACAATCAAGCATTGACAGCATGAAAGAAATTTCACCGGAAGGATATTATATGTAT
  ATTGCAAAAATCGATAATAGAACAACTAAAGTATGCAAAGGGCTTAATGGAGAAATATTC
  AAAGTTAAAGACGCTAAAATTGGTGTTAATTTTTATCCTATGCATATCAATTGTCGTTCA
  GATTGCGCTTTACTACCTAAATCTATGTGGCCGAAAAAACCAAGCAAGAAACGAAAAACA
  AAATACTTCGGAGGGAAAGTGAAAAGCGGTGATTGA
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⊟Protein

⊟General

• locus tag: NWMN_1017 [new locus tag: NWMN_RS05760 ]
• symbol: NWMN_1017
• description: phage head morphogenesis protein
• length: 331
• theoretical pI: 9.46951
• theoretical MW: 38459.9
• GRAVY: -0.651662

⊟Function

• TIGRFAM:
  Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage head morphogenesis protein, SPP1 gp7 family (TIGR01641; HMM-score: 136.1)
• TheSEED: data available for NCTC8325
• PFAM:
  no clan defined Phage_Mu_F; Phage Mu protein F like protein (PF04233; HMM-score: 46.9)
  and 3 more
  6PGD_C (CL0106) Octopine_DH; NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain (PF02317; HMM-score: 14.9)
  no clan defined DUF99; Protein of unknown function DUF99 (PF01949; HMM-score: 11.1)
  Spore_III_AB; Stage III sporulation protein AB (spore_III_AB) (PF09548; HMM-score: 8.9)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.003348
  • TAT(Tat/SPI): 0.000304
  • LIPO(Sec/SPII): 0.000487
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 151221229 NCBI
• RefSeq: YP_001332051 NCBI
• UniProt: A0A0H3K949 UniProt

⊟Protein sequence

• MPNKNTQEYWEERGRKAIENELKRDKTKAEEIERILNMMIKRIEKEINAFIVKYGDFAGVTLQEAQKIIDEFDVKAFQEEAKRLVENKDFSDRANEELKKYNTKMYVSREQILKIQIEFLIAYATAQTELSMREYFESTAYRVFSDQAGILGEGVQVAKEVIDTIVDTQFHGVVWSERLWTNTEAMKQEVEEIIANVVIRGRHPNEYVKDMRKHLNKFEGTARQKTAAIKSLLYTESARVHAQSSIDSMKEISPEGYYMYIAKIDNRTTKVCKGLNGEIFKVKDAKIGVNFYPMHINCRSDCALLPKSMWPKKPSKKRKTKYFGGKVKSGD

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: NWMN_1014 > NWMN_1015 > NWMN_1016 > NWMN_1017

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications