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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1014 [new locus tag: NWMN_RS05745 ]
- pan locus tag?: SAUPAN001674000
- symbol: NWMN_1014
- pan gene symbol?: —
- synonym:
- product: phage terminase small subunit
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1014 [new locus tag: NWMN_RS05745 ]
- symbol: NWMN_1014
- product: phage terminase small subunit
- replicon: chromosome
- strand: +
- coordinates: 1115489..1115929
- length: 441
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5330618 NCBI
- RefSeq: YP_001332048 NCBI
- BioCyc:
- MicrobesOnline: 3706565 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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421ATGAACGAAAAACAAAAGAGATTCGCAGATGAATATATAATGAATGGATGTAATGGTAAA
AAAGCAGCAATTACAGCAGGTTATAGTAAGAAAACAGCAGAGTCTTTAGCAAGTCGATTG
TTAAGAAATGTTAATGTTTCGGAATATATTAAAGAACGATTAGAACAGATACAAGAAGAG
CGTTTAATGAGTATTACAGAAGCTTTAGCGTTATCTGCTTCTATTGCTAGAGGAGAACCT
CAAGAGGCTTACAGTAAGAAATATGACCATTTAAACGATGAAGTGGAAAAAGAGGTTACT
TACACAATCACACCAACTTTTGAAGAGCGTCAGAGATCTATTGACCACATACTAAAAGTA
CATGGTGCGTATATCGATAAAAAAGAAATTACTCAGAAGAATATTGAGATTAATATTGGT
GAGTACGATGACGAAAGTTAA60
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441
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1014 [new locus tag: NWMN_RS05745 ]
- symbol: NWMN_1014
- description: phage terminase small subunit
- length: 146
- theoretical pI: 5.13029
- theoretical MW: 16806.7
- GRAVY: -0.819863
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for NCTC8325
- PFAM: no clan defined Terminase_2; Terminase small subunit (PF03592; HMM-score: 100.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.013094
- TAT(Tat/SPI): 0.000975
- LIPO(Sec/SPII): 0.007163
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNEKQKRFADEYIMNGCNGKKAAITAGYSKKTAESLASRLLRNVNVSEYIKERLEQIQEERLMSITEALALSASIARGEPQEAYSKKYDHLNDEVEKEVTYTITPTFEERQRSIDHILKVHGAYIDKKEITQKNIEINIGEYDDES
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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