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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 03-AUG-2016

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_02030
  • pan locus tag?: SAUPAN001697000
  • symbol: SAOUHSC_02030
  • pan gene symbol?: —
  • synonym:
  • product: phi ETA orf 55-like protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_02030
  • symbol: SAOUHSC_02030
  • product: phi ETA orf 55-like protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1934828..1936729
  • length: 1902
  • essential: no DEG

⊟Accession numbers[edit | edit source]

  • Gene ID: 3920483 NCBI
  • RefSeq: YP_500526 NCBI
  • BioCyc: G1I0R-1923 BioCyc
  • MicrobesOnline: 1290482 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGACAATAACTATTAAACCACCTAAAGGTAATGGCGCACCTGTACCAGTAGAAACAACT
    TTAGTAAAAAAAGTTAATGCTGACGGTGTATTAACTTTTGATATTCTAGAAAATAAATAT
    ACTTATGAAGTTATTAACGCTATAGGGAAAAGATGGATTGTTAGTCATGTCGAAGGTGAA
    AACGACAAGAAAGAATATGTAATAACTGTCATTGATAGGAAATCAGAAGGCGACAGACAA
    CTGGTTGAATGTACTGCTAGAGAGATTCCCATAGACAAGTTAATGATTGATAGAATTTAT
    GTTAATGTAACAGGATCTTTTACAGTAGAAAGATATTTTAACATTGTGTTTCAAGGTACT
    GGAATGCTTTTTGAAGTCGAGGGCAAAGTTAAATCTTCAAAGTTTGAAAATGGTGGTGAA
    GGCGATACAAGGTTAGAAATGTTTAAAAAGGGATTAGAACATTTCGGTTTAGAATATAAA
    ATAACGTATGACAAAAAGAAAGACAGATATAAGTTTGTATTGACGCCTTTTGCAAATCAA
    AAAGCGTCTTATTTTATTTCTGACGAAGTCAACGCCAACGCTATAAAACTCGAGGAAGAT
    GCAAGTGATTTCGCCACCTTCATTAGAGGATATGGTAATTATTCAGGAGAAGAAACATTC
    GAACACGCTGGGCTCGTAATGGAAGCTAGAAGTGCATTAGCTGAAATATACGGCGACATC
    CACGCAGAACCATTTAAAGATGGTAAAGTGACTGACCAAGAAACTATGGATAAAGAATTA
    CAATCGAGATTGAAAAAGTCGTTAAAACAATCTTTGTCTTTGGACTTTTTGGTGTTAAGA
    GAATCATATCCAGAAGCAGACCCACAACCCGGAGACATAGTACAAATAAAATCTACCAAA
    CTAGGTTTGAATGATTTAGTCCGTATAGTACAAGTTAAAACGATTAGGGGTATAAACAAT
    GTAATTGTTAAGCAAGATGTAACGCTTGGTGAGTTTAATCGAGAACAACGATATATGAAA
    AAAGTTAATACTGCAGCTAACTATGTTTCTGGATTAAATGATGTTAACCTTTCTAATCCT
    AGTAAAGCGGCAGAAAACTTGAAGTCTAAAGTAGCGTCAATAGCTAAATCAACACTCGAT
    TTGATGAGTAGAACTGATTTGATTGAAGATAAACAACAGAAGGTAAGCTCTAAAACTGTG
    ACTACATCTGACGGCACTATCGTTCATGATTTTATAGATAAATCAAACATTAAAGATGTA
    AAAACGATTGGAACGATTGGCGATTCTGTAGCTAGAGGATCACATGCGAAAACTAATTTC
    ACAGAAATGTTAGGCAAGAAGTTAAAAGCTAAAACGACCAACCTTGCAAGAGGTGGCGCA
    ACAATGGCAACAGTTCCAATAGGTAAAGAAGCGGTAGAAAACAGCATTTATAGACAAGCA
    GAGCAAATAAGAGGAGACCTAATCATATTACAAGGTACAGATGATGACTGGTTACATGGT
    TATTGGGCAGGCGTACCGATAGGCACTGATAAAACCGACACTAAAACGTTTTACGGCGCC
    TTTTGTTCTGCAATTGAAGTTATCAGGAAAAATAATCCAGCTTCAAAAATACTTGTAATG
    ACAGCTACTAGGCAATGCCCTATGAGTGGTACAACGATACGCCGTAAAGATACGGACAAA
    AACAAACTAGGGTTAACTTTAGAGGATTATGTCAATGCTCAGATATTGGCTTGTAGTGAA
    TTGGATGTACCAGTATATGATGCTTATCACACAGATTATTTCAAACCATATAATCCAGCA
    TTTAGAAAATCTAGCATGCCTGATGGATTACATCCTAATGAAAGAGGTCATGAAGTTATT
    ATGTATGAGCTTATTAAAAATTATTATCAGTTTTATGGATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1902

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_02030
  • symbol: SAOUHSC_02030
  • description: phi ETA orf 55-like protein
  • length: 633
  • theoretical pI: 7.3187
  • theoretical MW: 70987.2
  • GRAVY: -0.452765

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Phage phi 11 orf44 protein homolog
  • ⊞PFAM:
    no clan defined TT1_Tal; Tal, N-terminal tail tube TT1 domain (PF24650; HMM-score: 116.6)
    and 4 more
    Phage_barrel (CL0504) Prophage_tail; Prophage endopeptidase tail (PF06605; HMM-score: 79.6)
    SGNH_hydrolase (CL0264) Lipase_GDSL_2; GDSL-like Lipase/Acylhydrolase family (PF13472; HMM-score: 55.1)
    Lipase_GDSL; GDSL-like Lipase/Acylhydrolase (PF00657; HMM-score: 40.2)
    no clan defined DUF5839; Family of unknown function (DUF5839) (PF19157; HMM-score: 12.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0698
    • Cytoplasmic Membrane Score: 0.0231
    • Cell wall & surface Score: 0.0998
    • Extracellular Score: 0.8073
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 0
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008885
    • TAT(Tat/SPI): 0.000504
    • LIPO(Sec/SPII): 0.000846
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 88195717 NCBI
  • RefSeq: YP_500526 NCBI
  • UniProt: Q2FX67 UniProt
  • STRING: 93061.SAOUHSC_02030 STRING

⊟Protein sequence[edit | edit source]

  • MTITIKPPKGNGAPVPVETTLVKKVNADGVLTFDILENKYTYEVINAIGKRWIVSHVEGENDKKEYVITVIDRKSEGDRQLVECTAREIPIDKLMIDRIYVNVTGSFTVERYFNIVFQGTGMLFEVEGKVKSSKFENGGEGDTRLEMFKKGLEHFGLEYKITYDKKKDRYKFVLTPFANQKASYFISDEVNANAIKLEEDASDFATFIRGYGNYSGEETFEHAGLVMEARSALAEIYGDIHAEPFKDGKVTDQETMDKELQSRLKKSLKQSLSLDFLVLRESYPEADPQPGDIVQIKSTKLGLNDLVRIVQVKTIRGINNVIVKQDVTLGEFNREQRYMKKVNTAANYVSGLNDVNLSNPSKAAENLKSKVASIAKSTLDLMSRTDLIEDKQQKVSSKTVTTSDGTIVHDFIDKSNIKDVKTIGTIGDSVARGSHAKTNFTEMLGKKLKAKTTNLARGGATMATVPIGKEAVENSIYRQAEQIRGDLIILQGTDDDWLHGYWAGVPIGTDKTDTKTFYGAFCSAIEVIRKNNPASKILVMTATRQCPMSGTTIRRKDTDKNKLGLTLEDYVNAQILACSELDVPVYDAYHTDYFKPYNPAFRKSSMPDGLHPNERGHEVIMYELIKNYYQFYG

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

  • MicrobesOnline: SAOUHSC_02028 < SAOUHSC_02029 < SAOUHSC_02030 < SAOUHSC_02031
    predicted SigA promoter [1] : S810 < SAOUHSC_02019 < SAOUHSC_02020 < SAOUHSC_02021 < SAOUHSC_02022 < SAOUHSC_02023 < SAOUHSC_02025 < SAOUHSC_02026 < SAOUHSC_02027 < SAOUHSC_02028 < SAOUHSC_02029 < SAOUHSC_02030 < SAOUHSC_02031 < SAOUHSC_02033 < SAOUHSC_02034 < SAOUHSC_02035 < SAOUHSC_02036 < SAOUHSC_02037 < SAOUHSC_02038 < SAOUHSC_02040 < SAOUHSC_02041 < SAOUHSC_02042 < SAOUHSC_02043 < SAOUHSC_02044 < S811 < SAOUHSC_02046 < SAOUHSC_02047 < SAOUHSC_02048 < SAOUHSC_02049 < SAOUHSC_02050 < S812 < SAOUHSC_02051 < SAOUHSC_02052 < SAOUHSC_02053 < SAOUHSC_02054 < SAOUHSC_02055 < SAOUHSC_02056 < SAOUHSC_02057 < SAOUHSC_02058 < SAOUHSC_02059 < SAOUHSC_02060 < SAOUHSC_02061 < SAOUHSC_02062 < SAOUHSC_02063 < SAOUHSC_02064 < SAOUHSC_02065 < SAOUHSC_02066 < SAOUHSC_02067 < SAOUHSC_02068 < SAOUHSC_02069 < SAOUHSC_02070 < SAOUHSC_02071 < S813 < SAOUHSC_02072 < SAOUHSC_02073 < SAOUHSC_02074 < SAOUHSC_02075 < SAOUHSC_02076 < SAOUHSC_02077 < SAOUHSC_02078 < SAOUHSC_02079 < SAOUHSC_02080 < S816 < SAOUHSC_02081 < SAOUHSC_02083

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser:  [1] 
    Expression Data Browser
    ⊟Multi-gene expression profiles



    Click on any data point to display a description of the corresponding condition!

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: no data available

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Jump up to: 1.0 1.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAOUHSC_02030&oldid=90777"
  • This page was last edited on 11 March 2016, at 08:05.
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