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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08310 [old locus tag: SACOL1630 ]
  • pan locus tag?: SAUPAN004156000
  • symbol: SACOL_RS08310
  • pan gene symbol?: floA
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS08310 [old locus tag: SACOL1630 ]
  • symbol: SACOL_RS08310
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1659847..1660836
  • length: 990
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1659847..1660836) NCBI
  • BioCyc: SACOL_RS08310 BioCyc
  • MicrobesOnline: see SACOL1630

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGTTTAGTTTAAGTTTTATCGTAATAGCAGTTATTATAGTAGTTGCATTACTTATTTTA
    TTCTCATTTGTACCCATTGGTTTATGGATTTCAGCGTTAGCAGCTGGCGTTCATGTTGGT
    ATAGGTACATTGGTTGGTATGCGTTTACGTCGTGTATCTCCAAGAAAAGTTATAGCGCCA
    TTAATTAAAGCGCACAAAGCAGGACTAGCATTAACAACAAACCAATTAGAATCGCATTAT
    CTAGCAGGAGGAAATGTTGACAGAGTTGTTGACGCTAATATTGCTGCACAACGTGCTGAC
    ATTGATCTTCCTTTCGAACGTGCTGCTGCAATTGACCTTGCAGGACGTGACGTATTAGAA
    GCGGTTCAAATGTCTGTTAATCCTAAAGTCATTGAAACACCATTTATCGCAGGTGTAGCA
    ATGAACGGTATTGAAGTGAAAGCCAAAGCTCGTATCACAGTTAGAGCTAATATTGCTCGA
    CTTGTTGGTGGTGCTGGTGAAGAAACAATCATCGCACGTGTTGGTGAAGGTATCGTTTCA
    ACAATTGGTTCTAGTAAGCATCATACAGAAGTACTTGAAAACCCAGATAATATTTCTAAA
    ACAGTTTTAAGCAAAGGTTTAGATTCAGGTACTGCATTTGAAATTTTATCAATTGATATT
    GCTGACGTTGATATTAGTAAAAATATTGGTGCAGACTTACAAACTGAACAAGCATTAGCA
    GACAAAAATATTGCACAAGCAAAAGCTGAAGAACGTAGAGCTATGGCTGTAGCAACTGAG
    CAAGAAATGAAAGCGCGTGTACAAGAAATGCATGCTAAAGTAGTTGAAGCCGAATCTGAA
    GTACCATTAGCTATGGCTGAAGCATTACGTTCAGGTAATATCAGTGTTAAAGATTATTAT
    AATTTGAAAAATATCGAAGCTGATACAGGCATGAGAAATGCAATTAATAAACGAACTGAT
    CAAAGTGATGATGAGTCACCTGAACATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    990

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS08310 [old locus tag: SACOL1630 ]
  • symbol: SACOL_RS08310
  • description: hypothetical protein
  • length: 329
  • theoretical pI: 5.67882
  • theoretical MW: 35181.2
  • GRAVY: 0.128267

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 14.9)
  • TheSEED: see SACOL1630
  • ⊞PFAM:
    no clan defined FloA; Flotillin-like protein FloA (PF12127; HMM-score: 529.8)
    and 4 more
    tRNA_bind_arm (CL0298) Seryl_tRNA_N; Seryl-tRNA synthetase N-terminal domain (PF02403; HMM-score: 21)
    no clan defined Sensor; Putative sensor (PF13796; HMM-score: 13)
    DUF7134; Domain of unknown function (DUF7134) (PF23539; HMM-score: 12.6)
    SPFH (CL0433) Band_7; SPFH domain / Band 7 family (PF01145; HMM-score: 11.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 2
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0006
    • Cytoplasmic Membrane Score: 0.99
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0094
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.027543
    • TAT(Tat/SPI): 0.015251
    • LIPO(Sec/SPII): 0.002461
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

  • GI: 446414259 NCBI
  • RefSeq: WP_000492114 NCBI
  • UniProt: see SACOL1630

⊟Protein sequence[edit | edit source]

  • MFSLSFIVIAVIIVVALLILFSFVPIGLWISALAAGVHVGIGTLVGMRLRRVSPRKVIAPLIKAHKAGLALTTNQLESHYLAGGNVDRVVDANIAAQRADIDLPFERAAAIDLAGRDVLEAVQMSVNPKVIETPFIAGVAMNGIEVKAKARITVRANIARLVGGAGEETIIARVGEGIVSTIGSSKHHTEVLENPDNISKTVLSKGLDSGTAFEILSIDIADVDISKNIGADLQTEQALADKNIAQAKAEERRAMAVATEQEMKARVQEMHAKVVEAESEVPLAMAEALRSGNISVKDYYNLKNIEADTGMRNAINKRTDQSDDESPEH

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1630
  • protein localization: see SACOL1630
  • quantitative data / protein copy number per cell:
  • ⊟interaction partners:
    SACOL_RS11135(deoA)pyrimidine-nucleoside phosphorylase  [1] (data from MRSA252)
    SACOL_RS06560(nusA)transcription termination/antitermination protein NusA  [1] (data from MRSA252)
    SACOL_RS00470peptidoglycan-binding protein LysM  [1] (data from MRSA252)
    SACOL_RS00780aldehyde dehydrogenase  [1] (data from MRSA252)
    SACOL_RS01040formate acetyltransferase  [1] (data from MRSA252)
    SACOL_RS01135L-lactate dehydrogenase  [1] (data from MRSA252)
    SACOL_RS012152-C-methyl-D-erythritol 4-phosphate cytidylyltransferase  [1] (data from MRSA252)
    SACOL_RS02285alkyl hydroperoxide reductase subunit C  [1] (data from MRSA252)
    SACOL_RS02330IMP dehydrogenase  [1] (data from MRSA252)
    SACOL_RS02555ABC transporter substrate-binding protein  [1] (data from MRSA252)
    SACOL_RS0279050S ribosomal protein L25/general stress protein Ctc  [1] (data from MRSA252)
    SACOL_RS02835hypoxanthine-guanine phosphoribosyltransferase  [1] (data from MRSA252)
    SACOL_RS02850cysteine synthase  [1] (data from MRSA252)
    SACOL_RS02930pyridoxal 5'-phosphate synthase lyase subunit PdxS  [1] (data from MRSA252)
    SACOL_RS0302550S ribosomal protein L11  [1] (data from MRSA252)
    SACOL_RS03050DNA-directed RNA polymerase subunit beta  [1] (data from MRSA252)
    SACOL_RS0307030S ribosomal protein S7  [1] (data from MRSA252)
    SACOL_RS03075elongation factor G  [1] (data from MRSA252)
    SACOL_RS03080elongation factor Tu  [1] (data from MRSA252)
    SACOL_RS03275phosphate acetyltransferase  [1] (data from MRSA252)
    SACOL_RS03415zinc-dependent alcohol dehydrogenase  [1] (data from MRSA252)
    SACOL_RS03540metal ABC transporter substrate-binding protein  [1] (data from MRSA252)
    SACOL_RS03635dihydroxyacetone kinase subunit DhaK  [1] (data from MRSA252)
    SACOL_RS03830MarR family transcriptional regulator  [1] (data from MRSA252)
    SACOL_RS04075ribonucleotide-diphosphate reductase subunit alpha  [1] (data from MRSA252)
    SACOL_RS04310aldehyde dehydrogenase  [1] (data from MRSA252)
    SACOL_RS04315phosphoglycerate kinase  [1] (data from MRSA252)
    SACOL_RS04320triose-phosphate isomerase  [1] (data from MRSA252)
    SACOL_RS043252,3-bisphosphoglycerate-independent phosphoglycerate mutase  [1] (data from MRSA252)
    SACOL_RS04330enolase  [1] (data from MRSA252)
    SACOL_RS04495arsenate reductase  [1] (data from MRSA252)
    SACOL_RS04500glycine cleavage system protein H  [1] (data from MRSA252)
    SACOL_RS04840NADH dehydrogenase  [1] (data from MRSA252)
    SACOL_RS04925NAD-specific glutamate dehydrogenase  [1] (data from MRSA252)
    SACOL_RS04950glucose-6-phosphate isomerase  [1] (data from MRSA252)
    SACOL_RS05055beta-ketoacyl-[acyl-carrier-protein] synthase II  [1] (data from MRSA252)
    SACOL_RS05205hypothetical protein  [1] (data from MRSA252)
    SACOL_RS05275lipoate--protein ligase A  [1] (data from MRSA252)
    SACOL_RS05570phosphocarrier protein HPr  [1] (data from MRSA252)
    SACOL_RS05575phosphoenolpyruvate--protein phosphotransferase  [1] (data from MRSA252)
    SACOL_RS05605ribonuclease J 1  [1] (data from MRSA252)
    SACOL_RS05630pyruvate dehydrogenase E1 component subunit alpha  [1] (data from MRSA252)
    SACOL_RS05640dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex  [1] (data from MRSA252)
    SACOL_RS05900thiol reductase thioredoxin  [1] (data from MRSA252)
    SACOL_RS06175isoleucine--tRNA ligase  [1] (data from MRSA252)
    SACOL_RS06225carbamoyl-phosphate synthase large chain  [1] (data from MRSA252)
    SACOL_RS06365beta-ketoacyl-ACP reductase  [1] (data from MRSA252)
    SACOL_RS06445succinyl-CoA ligase subunit beta  [1] (data from MRSA252)
    SACOL_RS06495GTP-sensing pleiotropic transcriptional regulator CodY  [1] (data from MRSA252)
    SACOL_RS0650530S ribosomal protein S2  [1] (data from MRSA252)
    SACOL_RS06515elongation factor Ts  [1] (data from MRSA252)
    SACOL_RS06770glutamine synthetase  [1] (data from MRSA252)
    SACOL_RS07010transketolase  [1] (data from MRSA252)
    SACOL_RS07050aconitate hydratase  [1] (data from MRSA252)
    SACOL_RS07530alanine dehydrogenase  [1] (data from MRSA252)
    SACOL_RS07920phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)  [1] (data from MRSA252)
    SACOL_RS08090peptidase M24 family protein  [1] (data from MRSA252)
    SACOL_RS08270glycine--tRNA ligase  [1] (data from MRSA252)
    SACOL_RS08520hypothetical protein  [1] (data from MRSA252)
    SACOL_RS08795trigger factor  [1] (data from MRSA252)
    SACOL_RS08840threonine--tRNA ligase  [1] (data from MRSA252)
    SACOL_RS08865aldehyde dehydrogenase  [1] (data from MRSA252)
    SACOL_RS08910citrate synthase  [1] (data from MRSA252)
    SACOL_RS08930pyruvate kinase  [1] (data from MRSA252)
    SACOL_RS08995universal stress protein UspA  [1] (data from MRSA252)
    SACOL_RS09000acetate kinase  [1] (data from MRSA252)
    SACOL_RS090102-Cys peroxiredoxin  [1] (data from MRSA252)
    SACOL_RS09125formate--tetrahydrofolate ligase  [1] (data from MRSA252)
    SACOL_RS09225D-alanine aminotransferase  [1] (data from MRSA252)
    SACOL_RS09230dipeptidase PepV  [1] (data from MRSA252)
    SACOL_RS09385transaldolase  [1] (data from MRSA252)
    SACOL_RS10110glutamine amidotransferase  [1] (data from MRSA252)
    SACOL_RS10250aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B  [1] (data from MRSA252)
    SACOL_RS10360manganese-dependent inorganic pyrophosphatase  [1] (data from MRSA252)
    SACOL_RS10530molecular chaperone GroEL  [1] (data from MRSA252)
    SACOL_RS11010uracil phosphoribosyltransferase  [1] (data from MRSA252)
    SACOL_RS11075fructose-bisphosphate aldolase  [1] (data from MRSA252)
    SACOL_RS11085CTP synthetase  [1] (data from MRSA252)
    SACOL_RS11150purine-nucleoside phosphorylase  [1] (data from MRSA252)
    SACOL_RS11230glutamine--fructose-6-phosphate aminotransferase  [1] (data from MRSA252)
    SACOL_RS11435Asp23/Gls24 family envelope stress response protein  [1] (data from MRSA252)
    SACOL_RS1164550S ribosomal protein L17  [1] (data from MRSA252)
    SACOL_RS1175030S ribosomal protein S3  [1] (data from MRSA252)
    SACOL_RS12430quinone oxidoreductase  [1] (data from MRSA252)
    SACOL_RS126752,3-bisphosphoglycerate-dependent phosphoglycerate mutase  [1] (data from MRSA252)
    SACOL_RS13415hydroxymethylglutaryl-CoA synthase  [1] (data from MRSA252)
    SACOL_RS13695L-lactate dehydrogenase  [1] (data from MRSA252)
    SACOL_RS13720class I fructose-bisphosphate aldolase  [1] (data from MRSA252)
    SACOL_RS13725malate:quinone oxidoreductase  [1] (data from MRSA252)
    SACOL_RS13910ornithine carbamoyltransferase  [1] (data from MRSA252)
    SACOL_RS13915arginine deiminase  [1] (data from MRSA252)

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: see SACOL1630

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Jump up to: 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 1.19 1.20 1.21 1.22 1.23 1.24 1.25 1.26 1.27 1.28 1.29 1.30 1.31 1.32 1.33 1.34 1.35 1.36 1.37 1.38 1.39 1.40 1.41 1.42 1.43 1.44 1.45 1.46 1.47 1.48 1.49 1.50 1.51 1.52 1.53 1.54 1.55 1.56 1.57 1.58 1.59 1.60 1.61 1.62 1.63 1.64 1.65 1.66 1.67 1.68 1.69 1.70 1.71 1.72 1.73 1.74 1.75 1.76 1.77 1.78 1.79 1.80 1.81 1.82 1.83 1.84 1.85 1.86 1.87 1.88 1.89 1.90 Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
    Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
    J Proteome Res: 2011, 10(3);1139-50
    [PubMed:21166474] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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  • This page was last edited on 11 March 2016, at 12:07.
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