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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000955
- pan locus tag?: SAUPAN003156000
- symbol: opp4C
- pan gene symbol?: opp4C
- synonym:
- product: oligopeptide ABC transporter permease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000955
- symbol: opp4C
- product: oligopeptide ABC transporter permease
- replicon: chromosome
- strand: +
- coordinates: 960352..961233
- length: 882
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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841ATGCAAAATAAGTCAAAATCGCCTTTTAAAATTGCATTGTCTAAATTTATTCATAATAAA
ATTGCAATGTTATCGATTATTTTTTTATTAATCATAACTATTGTATCAATTATAGCGCCA
TTAATAGCTCCTTTTCCAGTGAACCAACAAGATTTATTAAATATAAAAGGTGAAATGACA
GCACAAAACATTCTTGGTACAGACTCTGGTGGTAGGGATAACTTTAGTCGTTTGTTATAT
GCAGGTCGTATTTCATTATCCATTGGAATTACATCTACAATAGGAATGCTTTTGATTGGA
ATTACAGTTGGAGTGATTTCTGGTTATTTTGGAGGTATTGTTGATACATTATTAATGAGA
ATAACCGAATTTGTTATGTTATTTCCATTTTTAATATTTGCAATTGTATTAAATGCTGCA
CTTGGAGATAAAATTAAAAATCCTTATGGATCTGCCATAATTCTTGTTCTAGTTATTATC
GTATTAAGTTGGGGAGGTATTGCAAGACTTGTTCGTGGTAAAGTACTTCAAGAAAAAGAA
AATGAATACTTTTTGGCAGCAAAATCAATTGGTACACCCACATATAAAATTATTTTGAAA
CATCTTTTGCCGAATATATTAAGTGTAGTTATCGTACAAGCAACATTGTTATTTGCCGGT
ATGATTGTAGTGGAATCAGGATTGAGCTTTTTAGGATTCGGAATTAGTAAAGCAATACCA
TCTTGGGGTAATATGTTGAGTGATGCTCAAGAAGGGGATGTTATAAGTGGTAAACCGTGG
ATATGGATGCCACCTGCTATAATGATTACATTAACTATATTAAGTATAAACTTTGTAGGG
GAAGGGCTTAAAGATGCTTTTAATCCTAGAGGTAGACGTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000955
- symbol: Opp4C
- description: oligopeptide ABC transporter permease
- length: 293
- theoretical pI: 10.4056
- theoretical MW: 31799.9
- GRAVY: 0.724573
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 204.3)and 3 moreTransport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikB (TIGR02789; EC 3.6.3.24; HMM-score: 22.3)Transport and binding proteins Anions sulfate ABC transporter, permease protein CysT (TIGR02139; HMM-score: 19)Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, permease protein (TIGR03262; HMM-score: 15.4)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 111.9)and 4 moreno clan defined OppC_N; N-terminal TM domain of oligopeptide transport permease C (PF12911; HMM-score: 50.5)DUF3593; Protein of unknown function (DUF3593) (PF12159; HMM-score: 13)TMEMspv1-c74-12; Plectrovirus spv1-c74 ORF 12 transmembrane protein (PF11044; HMM-score: 12.1)UPF0715; Uncharacterised protein family (UPF0715) (PF17094; HMM-score: 11.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9998
- Cell wall & surface Score: 0
- Extracellular Score: 0.0002
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.171992
- TAT(Tat/SPI): 0.000854
- LIPO(Sec/SPII): 0.004086
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MQNKSKSPFKIALSKFIHNKIAMLSIIFLLIITIVSIIAPLIAPFPVNQQDLLNIKGEMTAQNILGTDSGGRDNFSRLLYAGRISLSIGITSTIGMLLIGITVGVISGYFGGIVDTLLMRITEFVMLFPFLIFAIVLNAALGDKIKNPYGSAIILVLVIIVLSWGGIARLVRGKVLQEKENEYFLAAKSIGTPTYKIILKHLLPNILSVVIVQATLLFAGMIVVESGLSFLGFGISKAIPSWGNMLSDAQEGDVISGKPWIWMPPAIMITLTILSINFVGEGLKDAFNPRGRR
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : opp3b > opp3C > JSNZ_000948 > JSNZ_000949 > JSNZ_000950 > opp4A > JSNZ_000952 > JSNZ_000953 > opp4B > opp4C
⊟Regulation[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p) - ↑ Hannes Wolfgramm, Larissa Milena Busch, Jöran Tebben, Henry Mehlan, Lisa Hagenau, Thomas Sura, Tilly Hoffmüller, Elisa Bludau, Manuela Gesell Salazar, Alexander Reder, Stephan Michalik, Leif Steil, Kristin Surmann, Ulrike Mäder, Silva Holtfreter, Uwe Völker
Integrated genomic and proteomic analysis of the mouse-adapted Staphylococcus aureus strain JSNZ.
Curr Res Microb Sci: 2025, 9;100489
[PubMed:41146725] [WorldCat.org] [DOI] (I e)