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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000951
- pan locus tag?: SAUPAN003146000
- symbol: opp4A
- pan gene symbol?: opp4A
- synonym:
- product: oligopeptide ABC transporter substrate-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000951
- symbol: opp4A
- product: oligopeptide ABC transporter substrate-binding protein
- replicon: chromosome
- strand: +
- coordinates: 955649..957364
- length: 1716
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1681ATGGGGAAGCTAATTAAATATATTTCAATACTTATTGTTATCGTTTTAGTGTTGAGTGCT
TGCGGAAAAAGCAGTAATAAAGATGAAGGAGTAAAAGATGCTACTAAAACAGAAACCTCA
AAACATAAAGGTGGTACCTTAAATGTAGCATTAACAGCACCTCCAAGTGGTGTTTATTCT
TCGTTATTAAATAGTACACATGCGGATGCTGTAGTTGAGGGATATTTTAACGAAAGCTTA
TTAGCAACTGATAAAAAAATACGTCCTAAGGCATATATTGCTTCATGGAAGGACATCGAG
CCGGCTAAGAAAATAGAATTTAAAATTAAAAAAGGTATTAAATGGCATGATGGTAATGAA
TTGAAAATTGATGATTGGATTTATTCAATTGAAGTCTTAGCTAACAAGGACTACGAAGGT
GCTTATTATCCAAGTGTAGAAAATATCCAAGGTGCGAAAGATTATCATGAAGGAAAAACT
GATCATATTAGCGGATTGAAGAAAATAGATGACTACACTATGCAGGTTACATTTGATAAA
AAACAAGAAAATTACTTAACAGGATTTATTACTGGACCTTTATTAAGTAAAAAATATTTA
TCAGATGTACCAATTAAAGATTTAGCGAAATCAGATAAAATCCGAAAATATCCTATTGGT
ATTGGACCGTATAAAGTTAAGAAAATCGTTCCAGGTGAGGCTGTTCAACTCGTTAAATTT
GATGATTATTGGCAAGGTAAGCCTGCACTAGACAAAATCAATTTAAAAGTTATTGATCAA
GCGCAAATTATTAAGGCAATGGAAAAAGGCGATATTGATGTTGCGAATGATGCTACCGGT
GCAATGGCAAAAGATGCTAAGTCATCTAATGCTGGTCTCAAGGTATTATCTGCGCCAAGC
TTAGACTACGGTTTAATAGGATTCGTATCTCATGATTACGATAAAAAAGCTAATAAAACT
GGTAAAGTGAGACCAAAATATGAAGACAAAGAATTACGTAAAGCAATGCTTTATGCAATT
GATAGAGAAAAATGGATCAAAGCGTTTTTCAATGGTTACGCTAGTGAAATCAATAGTTTT
GTACCATCTATGCATTGGATAGCAGCCAATCCTAAGGACCTAAATGATTACAAATATGAT
CCTGAAAAAGCTAAAAAAATCTTAGATAAGTTAGGTTATAAAGATAGAGATGGTGACGGA
TTTAGAGAAGATCCTAAAGGTAATAAATTTGAGATTAACTTTAAACATTATTCAGGTTCT
AATCCTACTTTTGAACCAAGAACTGCTGCGATAAAAGATTTCTGGGAAAAAGTTGGCTTG
AAAACAAATGTGAAGTTAGTAGAATTCGGTAAATATAATGAAGACTTAGCAAATGCATCT
AAAGATATGGAAGTGTACTTCAGATCATGGGCAGGAGGTACAGATCCAGATCCATCAGAT
TTATACCACACTGATAGACCTCAAAATGAAATGAGAACAGTTTTACCAAAATCAGATCAA
TATTTAGATGATGCATTAGACTTCGAAAAAGTAGGCATTGATGAAAAGAAACGTAAAGAT
ATTTATGTTAAATGGCAAAAATATATGAATGATGAGTTACCTGGATTACCAATGTTCCAA
GGTAAATCGATAACTATTGTTAACGATAAAGTACGAAACTTAGACATTGAAATTGGAACT
GATCAAAGTTTATATAATTTAACTAAAGAAGCTTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000951
- symbol: Opp4A
- description: oligopeptide ABC transporter substrate-binding protein
- length: 571
- theoretical pI: 9.0042
- theoretical MW: 64560.1
- GRAVY: -0.630823
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, nickel/metallophore periplasmic binding protein (TIGR02294; HMM-score: 94.4)Transport and binding proteins Unknown substrate ABC transporter substrate binding protein, KPN_01854 family (TIGR04028; HMM-score: 78.9)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: PBP (CL0177) SBP_bac_5; Bacterial extracellular solute-binding proteins, family 5 Middle (PF00496; HMM-score: 267.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 3.33
- Cellwall Score: 3.33
- Extracellular Score: 3.33
- Internal Helix: 1
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0002
- Cytoplasmic Membrane Score: 0.6954
- Cell wall & surface Score: 0.0142
- Extracellular Score: 0.2902
- LocateP:
- SignalP: Signal peptide LIPO(Sec/SPII) length 20 aa
- SP(Sec/SPI): 0.0005
- TAT(Tat/SPI): 0.000099
- LIPO(Sec/SPII): 0.999139
- Cleavage Site: CS pos: 20-21. LSA-CG. Pr: 0.9997
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MGKLIKYISILIVIVLVLSACGKSSNKDEGVKDATKTETSKHKGGTLNVALTAPPSGVYSSLLNSTHADAVVEGYFNESLLATDKKIRPKAYIASWKDIEPAKKIEFKIKKGIKWHDGNELKIDDWIYSIEVLANKDYEGAYYPSVENIQGAKDYHEGKTDHISGLKKIDDYTMQVTFDKKQENYLTGFITGPLLSKKYLSDVPIKDLAKSDKIRKYPIGIGPYKVKKIVPGEAVQLVKFDDYWQGKPALDKINLKVIDQAQIIKAMEKGDIDVANDATGAMAKDAKSSNAGLKVLSAPSLDYGLIGFVSHDYDKKANKTGKVRPKYEDKELRKAMLYAIDREKWIKAFFNGYASEINSFVPSMHWIAANPKDLNDYKYDPEKAKKILDKLGYKDRDGDGFREDPKGNKFEINFKHYSGSNPTFEPRTAAIKDFWEKVGLKTNVKLVEFGKYNEDLANASKDMEVYFRSWAGGTDPDPSDLYHTDRPQNEMRTVLPKSDQYLDDALDFEKVGIDEKKRKDIYVKWQKYMNDELPGLPMFQGKSITIVNDKVRNLDIEIGTDQSLYNLTKEA
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: CodY (repression) regulon
CodY (TF) important in Amino acid metabolism; transcription unit predicted or transferred from N315 and NCTC 8325 in Wolfgramm et al. (https://doi.org/10.1101/2025.09.03.674026)
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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