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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001580
- pan locus tag?: SAUPAN004176000
- symbol: JSNZ_001580
- pan gene symbol?: comEA
- synonym:
- product: helix-hairpin-helix domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001580
- symbol: JSNZ_001580
- product: helix-hairpin-helix domain-containing protein
- replicon: chromosome
- strand: -
- coordinates: 1618008..1618694
- length: 687
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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661GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTA
TATATTATAAGTGCTGTTGTTTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAA
GATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTGCTCTGAAACAAAGCACTAGT
GAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAA
ATGACATCTAAGGATAGAGTAGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCA
GATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATCAAAAAATGATTTTCATACCT
CATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCT
GTTCCTGGAGTAGGGCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGT
GCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTTTTGGAAGTAAAACTTTTGAT
AAACTGAAATCTTATTTCACGATATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001580
- symbol: JSNZ_001580
- description: helix-hairpin-helix domain-containing protein
- length: 228
- theoretical pI: 9.68439
- theoretical MW: 25773.3
- GRAVY: -0.389474
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes DNA transformation comEA protein (TIGR01259; HMM-score: 117.4)and 4 moreCellular processes DNA transformation competence protein ComEA helix-hairpin-helix repeat region (TIGR00426; HMM-score: 74.6)Unknown function Enzymes of unknown specificity putative DNA modification/repair radical SAM protein (TIGR03916; HMM-score: 20.6)DNA metabolism DNA replication, recombination, and repair Holliday junction DNA helicase RuvA (TIGR00084; EC 3.6.4.12; HMM-score: 13.2)Transport and binding proteins Nucleosides, purines and pyrimidines nucleoside Transporter (TIGR00939; HMM-score: 12.6)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: HHH (CL0198) HHH_3; Helix-hairpin-helix motif (PF12836; HMM-score: 89.5)and 14 moreHHH; Helix-hairpin-helix motif (PF00633; HMM-score: 47.7)HHH_5; Helix-hairpin-helix domain (PF14520; HMM-score: 33.4)T2SSK; Type II secretion system (T2SS), protein K (PF03934; HMM-score: 23.8)Ubiquitin (CL0072) SLBB; SLBB domain (PF10531; HMM-score: 21.5)HHH (CL0198) HHH_2; Helix-hairpin-helix motif (PF12826; HMM-score: 21.5)HHH_6; Helix-hairpin-helix motif (PF14579; HMM-score: 19.5)HHH_8; Helix-hairpin-helix domain (PF14716; HMM-score: 16.5)T2SSK_1st; Type II secretion system (T2SS), protein K (PF21687; HMM-score: 16.4)PsbU; Photosystem II 12 kDa extrinsic protein (PsbU) (PF06514; HMM-score: 15)H2TH (CL0303) H2TH_5; S13-like H2TH domain (PF22525; HMM-score: 14.9)HHH (CL0198) UPF0758_N; UPF0758 N-terminal (PF20582; HMM-score: 14.4)Aha1_BPI (CL0648) DUF1439; Protein of unknown function (DUF1439) (PF07273; HMM-score: 13.9)HHH (CL0198) RNA_pol_A_CTD; Bacterial RNA polymerase, alpha chain C terminal domain (PF03118; HMM-score: 13.2)PH (CL0266) FERM_C_FAK1; FAK1/PYK2, FERM domain C-lobe (PF21477; HMM-score: 12.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.17
- Cytoplasmic Membrane Score: 9.51
- Cellwall Score: 0.16
- Extracellular Score: 0.15
- Internal Helix: 1
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.974
- Cell wall & surface Score: 0.0018
- Extracellular Score: 0.0241
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00159
- TAT(Tat/SPI): 0.000223
- LIPO(Sec/SPII): 0.001235
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : holA < JSNZ_001578 < JSNZ_001579 < JSNZ_001580 < JSNZ_001581 < rsfS < yqeK < nadD < yhbY < aroE < yqeH < JSNZ_001588 < mtnN
⊟Regulation[edit | edit source]
- regulator: SigH* regulon
SigH* (sigma factor) controlling competence and phage integrase genes; regulation predicted or transferred from N315 and NCTC 8325 in Wolfgramm et al. (https://doi.org/10.1101/2025.09.03.674026) other strains
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)