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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001450
- pan locus tag?: SAUPAN003925000
- symbol: aroB
- pan gene symbol?: aroB
- synonym:
- product: 3-dehydroquinate synthase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001450
- symbol: aroB
- product: 3-dehydroquinate synthase
- replicon: chromosome
- strand: -
- coordinates: 1497367..1498431
- length: 1065
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1021ATGAAATTACAAACAACCTATCCTTCTAACAATTATCCAATATTTGTTGAACATGGTGCA
ATTGACCATATTAGCACGTATATTGATCAGTTTGATCAAAGTTTTATATTAATTGACGAG
CATGTAAATCAATATTTTGCTGATAAATTTAATGATATTTTATCTTTTGGAAATGTACAT
AAAGTTATTATTCCAGCAGGTGAAAAGACAAAAACATTTCATCAATATCAAGAAACATTA
GAGTATATTTTATCCCATCATGTGACTCGTAATACAGCAATTATTGCTGTTGGTGGTGGT
GCAACTGGTGATTTTGCAGGATTTGTAGCAGCAACTCTATTAAGAGGTGTCCATTTTATA
CAAGTTCCTACAACGATTTTGGCGCATGATTCTAGTGTTGGCGGTAAAGTGGGTATTAAC
TCAAAACAAGGTAAAAACCTTATCGGTGCATTTTATCGTCCAACTGCTGTGATTTATGAT
TTAGACTTTTTAAAGACGTTACCATTTGAGCAAATATTAAGTGGCTATGCAGAAGTTTAT
AAGCATGCGTTATTGAATGGTGAATCAACGACGCAAGATATCGAACAGCACTTTAAAGAT
AGAGAGATATTACAGTCATTAAATGGTATGGATAAATATATTGCTAAAGGTATTGAAACG
AAGCTGGATATTGTTGTTGCAGATGAAAAAGAACAAGGTGTACGTAAATTTTTAAATTTA
GGTCATACATTTGGGCATGCTGTTGAATACTATCATAAAATACCTCATGGTCATGCCGTA
ATGATAGGCATAATATATCAATTTATTGTTGCGAATATATTGTTCAATTCTAATCACGAT
ATCCAACATTATATTAATTATTTAACGAAATTAGGTTATCCTTTAGAAACAATAACCGAC
ATAGATTTCGAAACGATATATCAATACATGCTAAGTGATAAAAAGAACGACAAACAAGGA
GTTCAAATGGTATTGATTAAACATTTTGGCGATATTGTAGTGCAACACATTGATCAAACA
ACACTGCAACATGCGTGTGAACAACTAAAAACATATTTTAAGTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001450
- symbol: AroB
- description: 3-dehydroquinate synthase
- length: 354
- theoretical pI: 6.54835
- theoretical MW: 40216.5
- GRAVY: -0.151412
⊟Function[edit | edit source]
- reaction: EC 4.2.3.4? ExPASy3-dehydroquinate synthase 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate = 3-dehydroquinate + phosphate
- TIGRFAM: Amino acid biosynthesis Aromatic amino acid family 3-dehydroquinate synthase (TIGR01357; EC 4.2.3.4; HMM-score: 369.7)and 1 moreBiosynthesis of cofactors, prosthetic groups, and carriers Lipoate putative sugar phosphate phospholyase (cyclizing) (TIGR04425; EC 4.2.3.-; HMM-score: 234.5)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: DHQS (CL0224) DHQ_synthase; 3-dehydroquinate synthase N-terminal (PF01761; HMM-score: 147.3)ADH_DHQS_C-like (CL0886) DHQS_C; 3-dehydroquinate synthase C-terminal (PF24621; HMM-score: 125.1)and 3 moreDHQS (CL0224) Fe-ADH_2; Iron-containing alcohol dehydrogenase (PF13685; HMM-score: 38.6)Fe-ADH; Iron-containing alcohol dehydrogenase (PF00465; HMM-score: 34.2)Toprim-like (CL0413) OLD-like_TOPRIM; Overcoming lysogenization defect protein-like, TOPRIM domain (PF20469; HMM-score: 16.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9825
- Cytoplasmic Membrane Score: 0.0143
- Cell wall & surface Score: 0.0006
- Extracellular Score: 0.0025
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002771
- TAT(Tat/SPI): 0.000077
- LIPO(Sec/SPII): 0.000281
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MKLQTTYPSNNYPIFVEHGAIDHISTYIDQFDQSFILIDEHVNQYFADKFNDILSFGNVHKVIIPAGEKTKTFHQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFIQVPTTILAHDSSVGGKVGINSKQGKNLIGAFYRPTAVIYDLDFLKTLPFEQILSGYAEVYKHALLNGESTTQDIEQHFKDREILQSLNGMDKYIAKGIETKLDIVVADEKEQGVRKFLNLGHTFGHAVEYYHKIPHGHAVMIGIIYQFIVANILFNSNHDIQHYINYLTKLGYPLETITDIDFETIYQYMLSDKKNDKQGVQMVLIKHFGDIVVQHIDQTTLQHACEQLKTYFK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_001446 < JSNZ_001447 < JSNZ_001448 < aroA < aroB < aroC
⊟Regulation[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p) - ↑ Hannes Wolfgramm, Larissa Milena Busch, Jöran Tebben, Henry Mehlan, Lisa Hagenau, Thomas Sura, Tilly Hoffmüller, Elisa Bludau, Manuela Gesell Salazar, Alexander Reder, Stephan Michalik, Leif Steil, Kristin Surmann, Ulrike Mäder, Silva Holtfreter, Uwe Völker
Integrated genomic and proteomic analysis of the mouse-adapted Staphylococcus aureus strain JSNZ.
Curr Res Microb Sci: 2025, 9;100489
[PubMed:41146725] [WorldCat.org] [DOI] (I e)