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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001447
  • pan locus tag?: SAUPAN003922000
  • symbol: JSNZ_001447
  • pan gene symbol?: —
  • synonym:
  • product: YpiB family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001447
  • symbol: JSNZ_001447
  • product: YpiB family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1494219..1494794
  • length: 576
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGTCAGAGACACTCAATCAAATTAAAGAAAGTTTTATTGAATATTTACTTTTTCAATAT
    CGATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAA
    TTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCA
    GAAGTGGGAAGTCACGCTTCTGCAATTCAATTTACTAAGCGTAATATAAAGTTAATGAAT
    ACAAATGAAATATTTGATTATATCGCTAATCATAACTGTGCTTTTGATATTCAAATTCAC
    TTCGCAAACGTGTCAAAGCGTGAGCAAAGGCTAGATGATTTAATAGTTGCTCAACTAACG
    GAATCGCCCAGTTATCAAACTTATCTTCATGACTTAAATAGTATGGCTATAGATCGGCAT
    AAACATGCGTTATTAATAGATTACTTGTTACACAATATTGATTTAAGTTTACAGATGAAT
    GAAAAGCAACGTTTTTATCAACTAACGCAAATTTTAAATACACTCAAGCTAGTAAATAAA
    CATAATCAATTTGAGGACTTAGCAGATGACGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    576

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001447
  • symbol: JSNZ_001447
  • description: YpiB family protein
  • length: 191
  • theoretical pI: 6.4331
  • theoretical MW: 22563.5
  • GRAVY: -0.348691

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined UPF0302; UPF0302 domain (PF08864; HMM-score: 102)
    and 3 more
    IDEAL; IDEAL domain (PF08858; HMM-score: 35.5)
    HTH (CL0123) E2F_TDP; E2F/DP family winged-helix DNA-binding domain (PF02319; HMM-score: 15.4)
    no clan defined DUF1433; Protein of unknown function (DUF1433) (PF07252; HMM-score: 13.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.6803
    • Cytoplasmic Membrane Score: 0.3034
    • Cell wall & surface Score: 0.0023
    • Extracellular Score: 0.014
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002207
    • TAT(Tat/SPI): 0.000194
    • LIPO(Sec/SPII): 0.000269
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSETLNQIKESFIEYLLFQYRFKSRIAVWVLNYIKVNEAKLANIHFVDTKINHHETLEIAEVGSHASAIQFTKRNIKLMNTNEIFDYIANHNCAFDIQIHFANVSKREQRLDDLIVAQLTESPSYQTYLHDLNSMAIDRHKHALLIDYLLHNIDLSLQMNEKQRFYQLTQILNTLKLVNKHNQFEDLADDD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CodY (repression) regulon
    CodY(TF)important in Amino acid metabolism;  regulation predicted or transferred from N315 and NCTC 8325  [2]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)
  2. ↑ Hannes Wolfgramm, Larissa Milena Busch, Jöran Tebben, Henry Mehlan, Lisa Hagenau, Thomas Sura, Tilly Hoffmüller, Elisa Bludau, Manuela Gesell Salazar, Alexander Reder, Stephan Michalik, Leif Steil, Kristin Surmann, Ulrike Mäder, Silva Holtfreter, Uwe Völker
    Integrated genomic and proteomic analysis of the mouse-adapted Staphylococcus aureus strain JSNZ.
    Curr Res Microb Sci: 2025, 9;100489
    [PubMed:41146725] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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