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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000374
  • pan locus tag?: SAUPAN002146000
  • symbol: JSNZ_000374
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000374
  • symbol: JSNZ_000374
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 407220..408542
  • length: 1323
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAGTAATAAATTTCGCTTAGATCATAGTTTTATAAATAATAAGACTGAGACAACTAGT
    GCAGTTTCTAAATTATCATATGAAATTGAAAATGCTAATCTCAATGGATTGCCAAAAACT
    AATTTGCAATTGCAGTTTGATAGATTAAAAGTAACTAATGAATTCCCTTCTAATCTTGAA
    TATATAGATAGTCACACAGATAAAAAGTACGGTGTGACAGCATCAGCTTTCTTAAACAAA
    GATACTGGGAAAGTGATTATTGGCATGACTGGAACAAACTTCAAAAAAGAAGCTCTTGCG
    AAGCAACTTTTGCTACCAGGGTTTGCAACAACAAAACAAGATAAAATTGACTCAGCTGAG
    ACTAGAAAGGATTTAATTTCCGATGTCCAAATTGGAACATTTCCTCCGTCTGATAAAAGC
    AAACATTATGAAGAAACACAAGAGTTCATCAAAAAAATAAAAAATAAGTATGATATTGAT
    TTTATTACTGGGCATTCATTAGGCGGTAGAGAAGCGGTAATATTAGGTATGAGTAATGGT
    ATTCCTAATATCGTTGTTTATAATCCAGCTCCCATATCAGCTATTGGCTTAGACCCTAAT
    TCTCGATTATTTAAATTATATAAAGGATATAAAGGTAACATTACTAGAGTTGTATCTAAT
    AAAGATGAGTTAACTAATTTTATTCAGGGATATACGAAATATGTTTATTTTGGACATGAG
    ATAGTGATTGAAAATGGTAAAGGTCATTCAATGGATGGATTCTTAACTGAACAAGAACAA
    AAAGCTATAAAAAAAGAACTTAAAAAACTACAAGGTTATGTAGAAGAAAATAATAAGTCA
    TTTGTAAAGCATTCTAATAATGCCATATCTAAATTAGCTAGTATAGAATTACTTAGAACA
    AATATGATGACTACAAATGGAGGTTGGTTATCTTCTTCGCAACAAAAAGCTTTAGAAAGT
    TTATCAGCTTTAACAATTGCGCAGTCATTCAGTCAACTGATAGATGATGAAATTAATCAA
    ATTAAAAAAATGTATAATGAAAAGGAAAAGAAATTTGAAAAAAATTGGGAAGACGCGCAA
    AAAGCTGGAAACGCTGTAGGTAAAGATATAACTGTGAGTGAAGTGCTAGAAGCTTTAGAT
    GAAGGTCATGTGAATGAAAGTAGTATGGTAGGAGATCCTGAACAAATGATATCTGCAAAA
    GAAAGACAACTTTCAACGATAGGGTCTTCTGTATCAAATTATATTCTAAGAGTTAGATCT
    AGTATTAATGAAATCGTTGATAAAGATCAAGTGCTTGCATCACAAATAGGTGGATTACTA
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1323

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000374
  • symbol: JSNZ_000374
  • description: hypothetical protein
  • length: 440
  • theoretical pI: 7.90119
  • theoretical MW: 49118.3
  • GRAVY: -0.511591

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Other tetrahydromethanopterin S-methyltransferase, subunit G (TIGR01149; EC 2.1.1.86; HMM-score: 16.4)
    Cellular processes Cellular processes Detoxification S-formylglutathione hydrolase (TIGR02821; EC 3.1.2.12; HMM-score: 13.8)
    Metabolism Fatty acid and phospholipid metabolism Degradation esterase, PHB depolymerase family (TIGR01840; EC 3.1.1.-; HMM-score: 13.4)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    AB_hydrolase (CL0028) Lipase_3; Lipase (class 3) (PF01764; HMM-score: 17.2)
    UPF0227; Uncharacterised protein family (UPF0227) (PF05728; HMM-score: 16.9)
    AlbA (CL0441) SLFN_AlbA_2; Schlafen, AlbA_2 (PF04326; HMM-score: 14.8)
    AB_hydrolase (CL0028) Abhydrolase_11; Alpha/beta hydrolase domain (PF20408; HMM-score: 14.4)
    NADP_Rossmann (CL0063) MOLO1; Modulator of levamisole receptor-1 (PF17175; HMM-score: 14.2)
    and 6 more
    no clan defined MtrG; Tetrahydromethanopterin S-methyltransferase, subunit G (PF04210; HMM-score: 12.7)
    Perilipin_sf (CL0718) Perilipin; Perilipin family (PF03036; HMM-score: 12.3)
    Apolipoprotein (CL0725) Apo-CIII; Apolipoprotein CIII (Apo-CIII) (PF05778; HMM-score: 11.3)
    no clan defined AbiH; Bacteriophage abortive infection AbiH (PF14253; HMM-score: 11.2)
    DUF3574; Protein of unknown function (DUF3574) (PF12098; HMM-score: 10.1)
    Wx5_PLAF3D7; Protein of unknown function (Wx5_PLAF3D7) (PF09688; HMM-score: 8.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0.0005
    • Extracellular Score: 0.9993
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006703
    • TAT(Tat/SPI): 0.000911
    • LIPO(Sec/SPII): 0.001172
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSNKFRLDHSFINNKTETTSAVSKLSYEIENANLNGLPKTNLQLQFDRLKVTNEFPSNLEYIDSHTDKKYGVTASAFLNKDTGKVIIGMTGTNFKKEALAKQLLLPGFATTKQDKIDSAETRKDLISDVQIGTFPPSDKSKHYEETQEFIKKIKNKYDIDFITGHSLGGREAVILGMSNGIPNIVVYNPAPISAIGLDPNSRLFKLYKGYKGNITRVVSNKDELTNFIQGYTKYVYFGHEIVIENGKGHSMDGFLTEQEQKAIKKELKKLQGYVEENNKSFVKHSNNAISKLASIELLRTNMMTTNGGWLSSSQQKALESLSALTIAQSFSQLIDDEINQIKKMYNEKEKKFEKNWEDAQKAGNAVGKDITVSEVLEALDEGHVNESSMVGDPEQMISAKERQLSTIGSSVSNYILRVRSSINEIVDKDQVLASQIGGLL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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