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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000373
- pan locus tag?: SAUPAN001250000
- symbol: JSNZ_000373
- pan gene symbol?: —
- synonym:
- product: tandem-type lipoprotein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000373
- symbol: JSNZ_000373
- product: tandem-type lipoprotein
- replicon: chromosome
- strand: +
- coordinates: 406415..407227
- length: 813
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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781ATGGAGTATATAAAAAAAATTGCTTTGTACATGAGTGTATTACTTTTAATCATTTTTATT
GGGGGATGTGGAAATATGAAAGATGAACAGAAAAAAGAAGTACAAACAAATAAAACAGAT
TCAAAAGAAGAACAAATCAAAAAGAGCTTTGCGAAAACATTAGATATGTACCCAATCAAA
AATCTTGAAGATTTATATGACAAAGAAGGCTATCGTGATGGAGAGTTTAAAAAGGACGAC
AAGGGGACATGGACGATATATTCAGACTTTGCTAAAAGTGAAAAAGCAGGTGAATTGGAT
AGTGAAGGTATGGTACTACATTTGAATAGAAATACACGGACAGCTAAAGGATATTATTTT
GTCAGAAAAACTTATGATGAAGAGGATAAGATGCCGCAAAGGAAAGATTATCGTGTTGAA
CTTAAAGATAATAAAATAGTACTTTTAGATAAGGTAGAAGATGAAAAACTTAAACATAAA
ATAGAAAAATTTAAATTTTTTGGACAATATGCAGATTTTAAAGACTTGAAAAATTATCGA
AATGGAAAAATATCGAGCAATGAAAATGTGCCGTTTTATGAAGCAGAGTACAAAATGAAA
AATAGTGATAGTAATGTAAAAAAACTAAGAGATGTTTATCCTATTACAACCAGTGAATCA
CCAACTTTAAAACTTCATATAGATGGGGATATAAAAGGTAGCTCGGTGGGATATAAAAAA
GTGGAATATATCTTTTCAAAGAAAAAAGATAACCAAATTTCTGTCAGTGACTTTTTAAAT
TATAACCCTTCGAAGGGTGAAAACAATGAGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000373
- symbol: JSNZ_000373
- description: tandem-type lipoprotein
- length: 270
- theoretical pI: 9.09163
- theoretical MW: 31663.7
- GRAVY: -0.988519
⊟Function[edit | edit source]
- TIGRFAM: Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 362)
- TheSEED:
- PFAM: LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 322.7)and 3 moreno clan defined EIAV_Rev; Rev protein of equine infectious anaemia virus (PF11129; HMM-score: 10.9)ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 10.4)no clan defined Tnp_P_element; Transposable element P transposase-like, HTH domain (PF12017; HMM-score: 10.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 3.33
- Cellwall Score: 3.33
- Extracellular Score: 3.33
- Internal Helix: 1
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0002
- Cytoplasmic Membrane Score: 0.7678
- Cell wall & surface Score: 0.0045
- Extracellular Score: 0.2275
- LocateP:
- SignalP: Signal peptide LIPO(Sec/SPII) length 22 aa
- SP(Sec/SPI): 0.000423
- TAT(Tat/SPI): 0.000056
- LIPO(Sec/SPII): 0.999251
- Cleavage Site: CS pos: 22-23. IGG-CG. Pr: 0.9998
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MEYIKKIALYMSVLLLIIFIGGCGNMKDEQKKEVQTNKTDSKEEQIKKSFAKTLDMYPIKNLEDLYDKEGYRDGEFKKDDKGTWTIYSDFAKSEKAGELDSEGMVLHLNRNTRTAKGYYFVRKTYDEEDKMPQRKDYRVELKDNKIVLLDKVEDEKLKHKIEKFKFFGQYADFKDLKNYRNGKISSNENVPFYEAEYKMKNSDSNVKKLRDVYPITTSESPTLKLHIDGDIKGSSVGYKKVEYIFSKKKDNQISVSDFLNYNPSKGENNE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000373 > JSNZ_000374 > JSNZ_000375 > JSNZ_000376
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)