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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS13900 [old locus tag: SA2424 ]
  • pan locus tag?: SAUPAN006359000
  • symbol: SA_RS13900
  • pan gene symbol?: arcR
  • synonym:
  • product: transcriptional regulator

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS13900 [old locus tag: SA2424 ]
  • symbol: SA_RS13900
  • product: transcriptional regulator
  • replicon: chromosome
  • strand: -
  • coordinates: 2721278..2721982
  • length: 705
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2721278..2721982) NCBI
  • BioCyc: SA_RS13900 BioCyc
  • MicrobesOnline: see SA2424

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGACAGAAAACTTTATTTTGGGTAGAAATAATAAATTAGAACATGAACTAAAGGCATTA
    GCAGATTACATTAATATCCCATATAGTATATTACAACCATATCAAAGTGAATGTTTTGTC
    AGACATTATACGAAAGGCCAAGTTATTTATTTTTCGCCACAAGAAAGTAGCAATATTTAC
    TTTTTAATTGAAGGTAATATTATTAGAGAACATTACAATCAAAATGGAGATGTATATCGT
    TATTTTAATAAAGAGCAAGTATTATTTCCAATCAGTAACTTATTTCATCCGAAAGAGGTT
    AACGAATTGTGTACAGCATTAACCGATTGTACAGTTCTTGGATTGCCTAGAGAATTGATG
    GCTTTTTTGTGCAAAGCTAATGATGATATATTTTTGACACTTTTTGCATTAATAAATGAT
    AATGAGCAGCAACACATGAACTATAACATGGCATTAACAAGTAAATTTGCTAAAGATCGA
    ATTATTAAATTGTTATGTCATCTATGTCAGACAGTAGGGTACGATCAAGATGAATTTTAT
    GAAATCAAACAGTTTTTAACTATTCAACTCATGAGTGATATGGCTGGGATTTCCCGGGAA
    ACAGCTGGTCATATTATTCATGAACTTAAAGATGAAAAACTTGTTGTTAAAGATCATAAA
    AATTGGTTAGTAAGCAAACATTTATTCAATGATGTATGTGTTTAA
    60
    120
    180
    240
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    360
    420
    480
    540
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    660
    705

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS13900 [old locus tag: SA2424 ]
  • symbol: SA_RS13900
  • description: transcriptional regulator
  • length: 234
  • theoretical pI: 5.97765
  • theoretical MW: 27428.3
  • GRAVY: -0.22094

⊟Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions DNA interactions global nitrogen regulator NtcA (TIGR03697; HMM-score: 27.6)
  • TheSEED: see SA2424
  • ⊞PFAM:
    Cupin (CL0029) cNMP_binding; Cyclic nucleotide-binding domain (PF00027; HMM-score: 33)
    HTH (CL0123) HTH_Crp_2; Crp-like helix-turn-helix domain (PF13545; HMM-score: 30.2)
    and 3 more
    DIP2311-like_C; Transcriptional regulator DIP2311-like, C-terminal domain (PF22168; HMM-score: 16.4)
    MIF (CL0082) Tautomerase; Tautomerase enzyme (PF01361; HMM-score: 14.5)
    no clan defined Catalase-rel; Catalase-related immune-responsive (PF06628; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • genes regulated by ArcR*, TF important in Arginine degradation: see SA2424

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9463
    • Cytoplasmic Membrane Score: 0.0378
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0157
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004428
    • TAT(Tat/SPI): 0.000272
    • LIPO(Sec/SPII): 0.000783
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTENFILGRNNKLEHELKALADYINIPYSILQPYQSECFVRHYTKGQVIYFSPQESSNIYFLIEGNIIREHYNQNGDVYRYFNKEQVLFPISNLFHPKEVNELCTALTDCTVLGLPRELMAFLCKANDDIFLTLFALINDNEQQHMNYNMALTSKFAKDRIIKLLCHLCQTVGYDQDEFYEIKQFLTIQLMSDMAGISRETAGHIIHELKDEKLVVKDHKNWLVSKHLFNDVCV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: ArcR*, ArgR*, CcpA, Rex* see SA2424

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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