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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004813000
- symbol?: trnaS
- synonym:
- description?: tRNA-Ser
- tRNA-Ser
- pseudogene
- tRNA-OTHER
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5010743..5010832
- synteny block?: BlockID0037430
- occurrence?: in 94% of 34 strains
trnaS : tRNA-SerUGA
Modifications: [1]
• adenosine(22) → 1-methyladenosine(22)
• uridine(34) → 5-methoxyuridine(34)
• adenosine(37) → N(6)-isopentenyladenosine(37)
• uridine(54) → thymidine(54)
Transfer RNA coding elements are organized in up to eleven loci in Staphylococcus aureus. Staphylococci encode up to five seryl-tRNA sequences. This tRNA-SerUGA2 is from Locus VII; other tRNA-Ser can be found elsewhere as an isolated tRNA (tRNA-SerUGA1 ) in Locus III (tRNA-SerGCU), in Locus IV (tRNA-SerGGA), and in Locus VII (tRNA-SerUGA3 ). Please note that some additional modifications, such as pseudouridines (Ψ) are almost certainly present but not captured in the above cited reference.
⊟Orthologs[edit | edit source]
04-02981:
SA2981_tRNA42
08BA02176:
C248_1917 (trnaS)
11819-97:
MS7_1879
6850:
RSAU_001732
71193:
—
ECT-R 2:
ECTR2_1717
ED133:
SAOV_1871c
ED98:
SAAV_1896
HO 5096 0412:
SAEMRSA15_tRNA0040
JH1:
SaurJH1_R0051
JH9:
SaurJH9_R0051
JKD6008:
SAA6008_t39
JKD6159:
SAA6159_t38
JSNZ:
JSNZ_001872
LGA251:
SARLGA251_t54
M013:
M013TW_1878
MRSA252:
SARt039
MSHR1132:
SAMSHR1132_t31
MSSA476:
SASt039
Mu3:
SAHV_t0040
Mu50:
SAVtRNA39
MW2:
MWtRNA39
RF122:
SAB_t38
ST398:
SAPIG1940
T0131:
SAT0131_t031
TCH60:
HMPREF0772_t10034
TW20:
SATW20_t390
USA300_TCH1516:
USA300HOU_t0039
VC40:
SAVC_t12543
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ Laura Antoine, Philippe Wolff, Eric Westhof, Pascale Romby, Stefano Marzi
Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.
Biochimie: 2019, 164;60-69
[PubMed:31295507] [WorldCat.org] [DOI] (I p)