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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004743000
- symbol?: trnaS
- synonym:
- description?: tRNA-Ser
- tRNA-Ser
- tRNA-OTHER
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4963735..4968258
- synteny block?: BlockID0036760
- occurrence?: in 100% of 34 strains
trnaS : tRNA-SerGGA
Modifications are not characterized for this specific tRNA [1]
Transfer RNA coding elements are organized in up to eleven loci in Staphylococcus aureus. Staphylococci encode up to five seryl-tRNA sequences. This tRNA-SerGGA is from Locus IV; other tRNA-Ser can be found elsewhere as an isolated tRNA (tRNA-SerUGA1 ) in Locus III (tRNA-SerGCU), and in Locus VII (tRNA-SerUGA2 and tRNA-SerUGA3). Please note that some additional modifications, such as pseudouridines (Ψ) are almost certainly present but not captured in the above cited reference.
⊟Orthologs[edit | edit source]
04-02981:
SA2981_tRNA19
08BA02176:
C248_1863 (trnaS)
11819-97:
MS7_1828
6850:
RSAU_001682
71193:
ST398NM01_r049
ECT-R 2:
ECTR2_1665
ED133:
SAOV_1818c
ED98:
SAAV_1841
HO 5096 0412:
SAEMRSA15_tRNA0017
JH1:
SaurJH1_R0029
JH9:
SaurJH9_R0029
JKD6008:
SAA6008_t17
JKD6159:
SAA6159_t16
JSNZ:
JSNZ_001820
LGA251:
SARLGA251_t11
M013:
M013TW_1829
MRSA252:
SARt017
MSHR1132:
SAMSHR1132_t09
MSSA476:
SASt017
Mu3:
SAHV_t0017
Mu50:
SAVtRNA17
MW2:
MWtRNA17
RF122:
SAB_t17
ST398:
SAPIG1888
T0131:
SAT0131_t050
TCH60:
HMPREF0772_t10055
TW20:
SATW20_t170
USA300_TCH1516:
USA300HOU_t0017
VC40:
SAVC_t12497
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ Laura Antoine, Philippe Wolff, Eric Westhof, Pascale Romby, Stefano Marzi
Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.
Biochimie: 2019, 164;60-69
[PubMed:31295507] [WorldCat.org] [DOI] (I p)