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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002188000
- symbol?: —
- synonym:
- description?: tRNA-Ser
- tRNA-Ser
- tRNA-OTHER
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2695739..2695829
- synteny block?: BlockID0014890
- occurrence?: in 94% of 34 strains
trnaS : tRNA-SerUGA
Modifications: [1]
• adenosine(22) → 1-methyladenosine(34)
• uridine(34) → 5-methoxyuridine(34)
• adenosine(37) → N(6)-isopentenyladenosine(37)
• uridine(54) → thymidine(54)
Transfer RNA coding elements are organized in up to eleven loci in Staphylococcus aureus. Staphylococci encode up to five seryl-tRNA sequences. This tRNA-SerUGA1 is an isolated tRNA ; other tRNA-Ser can be found elsewhere in Locus III (tRNA-SerGCU), in Locus IV (tRNA-SerGGA), and in Locus VII (tRNA-SerUGA3 and tRNA-SerUGA2). Please note that some additional modifications, such as pseudouridines (Ψ) are almost certainly present but not captured in the above cited reference.
⊟Orthologs[edit | edit source]
04-02981:
SA2981_tRNA03
08BA02176:
C248_0523
11819-97:
MS7_0447
6850:
RSAU_000407
71193:
—
ECT-R 2:
ECTR2_407
ED133:
SAOV_0491
ED98:
SAAV_0416
HO 5096 0412:
SAEMRSA15_tRNA0003
JH1:
SaurJH1_R0003
JH9:
SaurJH9_R0003
JKD6008:
SAA6008_t03
JKD6159:
SAA6159_t03
JSNZ:
JSNZ_000406
LGA251:
SARLGA251_t60
M013:
M013TW_0438
MRSA252:
SARt003
MSHR1132:
SAMSHR1132_t03
MSSA476:
SASt003
Mu3:
SAHV_t0003
Mu50:
SAVtRNA03
MW2:
MWtRNA03
RF122:
SAB_t03
ST398:
SAPIG0539
T0131:
SAT0131_t002
TCH60:
HMPREF0772_t10010
TW20:
SATW20_t030
USA300_TCH1516:
USA300HOU_t0003
VC40:
SAVC_t12471
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ Laura Antoine, Philippe Wolff, Eric Westhof, Pascale Romby, Stefano Marzi
Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.
Biochimie: 2019, 164;60-69
[PubMed:31295507] [WorldCat.org] [DOI] (I p)