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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004811000
- symbol?: trnaS
- synonym:
- description?: tRNA-Ser
- strand?: -
- coordinates?: 5010529..5010618
- synteny block?: BlockID0037410
- occurrence?: in 91% of 34 strains
trnaS : tRNA-SerUGA
Modifications are not characterized for this specific tRNA [1]
Transfer RNA coding elements are organized in up to eleven loci in Staphylococcus aureus. Staphylococci encode up to five seryl-tRNA sequences. This tRNA-SerUGA3 is from Locus VII; other tRNA-Ser can be found elsewhere as an isolated tRNA (tRNA-SerUGA1 ) in Locus III (tRNA-SerGCU), in Locus IV (tRNA-SerGGA), and in Locus VII (tRNA-SerUGA2 ). Please note that some additional modifications, such as pseudouridines (Ψ) are almost certainly present but not captured in the above cited reference.
⊟Orthologs[edit | edit source]
04-02981:
SA2981_tRNA40
08BA02176:
C248_1915 (trnaS)
11819-97:
MS7_1877
6850:
RSAU_001730
71193:
—
ECT-R 2:
ECTR2_1715
ED133:
SAOV_1869c
ED98:
SAAV_1894
HO 5096 0412:
SAEMRSA15_tRNA0038
JH1:
SaurJH1_R0049
JH9:
SaurJH9_R0049
JKD6008:
SAA6008_t36
JKD6159:
SAA6159_t36
JSNZ:
JSNZ_001870
LGA251:
SARLGA251_t53
M013:
M013TW_1877
MRSA252:
SARt037
MSHR1132:
SAMSHR1132_t29
MSSA476:
SASt037
Mu3:
SAHV_t0038
Mu50:
SAVtRNA37
MW2:
MWtRNA37
RF122:
SAB_t36
ST398:
SAPIG1938
T0131:
—
TCH60:
HMPREF0772_t10036
TW20:
SATW20_t360
USA300_TCH1516:
USA300HOU_t0037
VC40:
SAVC_t12539
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ Laura Antoine, Philippe Wolff, Eric Westhof, Pascale Romby, Stefano Marzi
Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.
Biochimie: 2019, 164;60-69
[PubMed:31295507] [WorldCat.org] [DOI] (I p)