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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003207000
- symbol?: trnaS
- synonym:
- description?: tRNA-Ser
- strand?: -
- coordinates?: 3598700..3598792
- synteny block?: BlockID0022940
- occurrence?: in 97% of 34 strains
trnaS : tRNA-SerGCU
Modifications: [1]
• adenosine(22) → 1-methyladenosine(22)
• adenosine(37) → N(6)-threonylcarbamoyladenosine(37)
• uridine(54) → thymidine(54)
Transfer RNA coding elements are organized in up to eleven loci in Staphylococcus aureus. Staphylococci encode up to five seryl-tRNA sequences. This tRNA-SerGCU is from Locus III; other tRNA-Ser can be found elsewhere as an isolated tRNA (tRNA-SerUGA1 ) in Locus IV (tRNA-SerGGA), and in Locus VII (tRNA-SerUGA3 and tRNA-SerUGA2). Please note that some additional modifications, such as pseudouridines (Ψ) are almost certainly present but not captured in the above cited reference.
⊟Orthologs[edit | edit source]
04-02981:
SA2981_tRNA16
08BA02176:
C248_1048 (trnaS)
11819-97:
MS7_0981
6850:
RSAU_000910
71193:
ST398NM01_r052
ECT-R 2:
ECTR2_880
ED133:
SAOV_0969c
ED98:
SAAV_0988
HO 5096 0412:
SAEMRSA15_tRNA0014
JH1:
SaurJH1_R0026
JH9:
SaurJH9_R0025
JKD6008:
SAA6008_t14
JKD6159:
SAA6159_t13
JSNZ:
JSNZ_000984
LGA251:
SARLGA251_t34
M013:
M013TW_0952
MRSA252:
SARt014
MSHR1132:
SAMSHR1132_t06
MSSA476:
SASt014
Mu3:
SAHV_t0014
Mu50:
SAVtRNA14
MW2:
MWtRNA14
RF122:
—
ST398:
SAPIG1021
T0131:
SAT0131_t053
TCH60:
HMPREF0772_t10058
TW20:
SATW20_t140
USA300_TCH1516:
USA300HOU_t0014
VC40:
SAVC_t12491
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ Laura Antoine, Philippe Wolff, Eric Westhof, Pascale Romby, Stefano Marzi
Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.
Biochimie: 2019, 164;60-69
[PubMed:31295507] [WorldCat.org] [DOI] (I p)