PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001133000
• symbol^?: tarI
• synonym:
• description^?: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

  descriptions from strain specific annotations:

  • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
  • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative
  • D-ribitol-5-phosphate cytidylyltransferase
  • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEPcytidylyltransferase) (MCT)
  • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2, IspD_2
  • 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, putative
  • ribitol-5-phosphate cytidylyltransferase
• strand^?: +
• coordinates^?: 1402793..1403509
• synteny block^?: BlockID0006530
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0240 (ispD)
N315:
SA0245 (ispD)
NCTC8325:
SAOUHSC_00225 (ispD)
Newman:
NWMN_0189 (ispD)
USA300_FPR3757:
SAUSA300_0249 (ispD)
04-02981:
SA2981_0255
08BA02176:
C248_0243 (ispD)
11819-97:
MS7_0245 (ispD2)
6850:
RSAU_000199
71193:
ST398NM01_0268
ECT-R 2:
ECTR2_216
ED133:
SAOV_0194
ED98:
SAAV_0223 (ispD_1)
HO 5096 0412:
SAEMRSA15_02140
JH1:
SaurJH1_0246 (ispD)
JH9:
SaurJH9_0240 (ispD)
JKD6008:
SAA6008_00229 (ispD_2)
JKD6159:
SAA6159_00232 (ispD_2)
LGA251:
SARLGA251_02190 (ispD2)
M013:
M013TW_0236
MRSA252:
SAR0252 (ispD)
MSHR1132:
SAMSHR1132_02230
MSSA476:
SAS0232 (ispD)
Mu3:
SAHV_0254 (ispD)
Mu50:
SAV0255 (ispD)
MW2:
MW0231 (ispD)
RF122:
SAB0194 (ispD)
ST398:
SAPIG0268
T0131:
SAT0131_00248
TCH60:
HMPREF0772_10247 (ispD)
TW20:
SATW20_02570 (ispD2)
USA300_TCH1516:
USA300HOU_0266 (ispD)
VC40:
SAVC_01015 (ispD)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTH
  N315            MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTH
  NCTC8325        MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTH
  Newman          MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTH
  USA300_FPR3757  MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTH
                  ************************************************************
  
  COL             TKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHR
  N315            TKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHR
  NCTC8325        TKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHR
  Newman          TKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHR
  USA300_FPR3757  TKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHR
                  ************************************************************
  
  COL             IIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKES
  N315            IIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKES
  NCTC8325        IIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKES
  Newman          IIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKES
  USA300_FPR3757  IIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKES
                  ************************************************************
  
  COL             YAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
  N315            YAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
  NCTC8325        YAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
  Newman          YAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
  USA300_FPR3757  YAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
                  **********************************************************