PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001123000
• symbol^?: tarI'
• synonym:
• description^?: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

  descriptions from strain specific annotations:

  • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
  • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase 1)(MEP cytidylyltransferase 1) (MCT 1)
  • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1, IspD_1
  • 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, putative
  • D-ribitol-5-phosphate cytidylyltransferase
  • ribitol-5-phosphate cytidylyltransferase
• strand^?: +
• coordinates^?: 1396608..1397338
• synteny block^?: BlockID0006430
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0236 (ispD)
N315:
SA0241 (ispD)
NCTC8325:
SAOUHSC_00220
Newman:
NWMN_0185
USA300_FPR3757:
SAUSA300_0245
04-02981:
SA2981_0251
08BA02176:
C248_0238
11819-97:
MS7_0239 (ispD1)
6850:
RSAU_000195
71193:
ST398NM01_0263
ECT-R 2:
ECTR2_212
ED133:
SAOV_0190
ED98:
SAAV_0219 (ispD)
HO 5096 0412:
SAEMRSA15_02100
JH1:
SaurJH1_0242
JH9:
SaurJH9_0236
JKD6008:
SAA6008_00224 (ispD_1)
JKD6159:
SAA6159_00228 (ispD_1)
LGA251:
SARLGA251_02150 (ispD1)
M013:
M013TW_0232
MRSA252:
SAR0246 (ispD)
MSHR1132:
SAMSHR1132_02190
MSSA476:
SAS0227 (ispD)
Mu3:
SAHV_0250
Mu50:
SAV0251 (ispD)
MW2:
MW0227 (ispD)
RF122:
SAB0190
ST398:
SAPIG0263
T0131:
SAT0131_00243
TCH60:
HMPREF0772_10252 (ispD1)
TW20:
SATW20_02530 (ispD1)
USA300_TCH1516:
USA300HOU_0262 (ispD2)
VC40:
SAVC_00995

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISH
  N315            MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISH
  NCTC8325        --------------MGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISH
  Newman          MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISH
  USA300_FPR3757  --------------MGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISH
                                **********************************************
  
  COL             TQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQR
  N315            TQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQR
  NCTC8325        TQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQR
  Newman          TQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQR
  USA300_FPR3757  TQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQR
                  ************************************************************
  
  COL             IIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDS
  N315            IIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDS
  NCTC8325        IIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDS
  Newman          IIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDS
  USA300_FPR3757  IIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDS
                  ************************************************************
  
  COL             YRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
  N315            YRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
  NCTC8325        YRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
  Newman          YRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
  USA300_FPR3757  YRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
                  **********************************************************