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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL2399 [new locus tag: SACOL_RS12585 ]
- pan locus tag?: SAUPAN005933000
- symbol: nirR
- pan gene symbol?: nirR
- synonym:
- product: transcriptional regulator NirR
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL2399 [new locus tag: SACOL_RS12585 ]
- symbol: nirR
- product: transcriptional regulator NirR
- replicon: chromosome
- strand: -
- coordinates: 2460981..2461712
- length: 732
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3236581 NCBI
- RefSeq: YP_187202 NCBI
- BioCyc: see SACOL_RS12585
- MicrobesOnline: 913879 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721GTGAATGGGAATATCATTGTTGCACATGGCATGAGGCACGGACGACAGAATCAAGCGTTA
GAAGCATTTATTTCTGAATTAGTAAAAGATGATATACATCACTATGATATTGCGTTTTTA
GAAAGTGAGCATCAGGATTTAGAGACGGTAATGACGACGTTGATTCAAAGTGGGGTTGAC
CATTTTAAAATTGTACCATTGCTAATCTTTAGTGCAATGCATTATCTCAAGGATATACCG
AATATCGTTCATGAAATGAAACGACGGTATCCAGACATAAAGGTAGAAGTAAGCGAGCCA
CTTGGCACACATCCTTTAATGAGACGATTAATTGAACAACGTATTTGTGACGCATTAGCA
GGTGACGAACAACAAGTTGGAGTTATGGTTGTTGCACACGGCAATATTAATGGAAAGTTT
ACTAAGGCACACGAAGAGTTACAAATATGCGCTCAAAATTTGCAAATTAGCAAGCCGACA
TATGCGAGAACGCTATATGGAGAGATTAGTTTTACACATGATTTAGAAAGCATCTCGAAA
CGGTATCAAAAATTGATTGTCGTACCATTATTTTTATATGACGGAAGACTTGTTAACAAA
GTGAAGCAGCAAATGAATGACATGGTTATTAATACAGATATACACTTCACACCTTCAATT
AACTTCGACCCAATTTTAAAGCAAATCATTAACGATAGATTAGAAAGCTTAATGATTCCA
ATGAAAATATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL2399 [new locus tag: SACOL_RS12585 ]
- symbol: NirR
- description: transcriptional regulator NirR
- length: 243
- theoretical pI: 6.70595
- theoretical MW: 27948.3
- GRAVY: -0.147325
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Sirohydrochlorin ferrochelatase (EC 4.99.1.4)
- ⊞PFAM: Chelatase (CL0043) CbiX; CbiX (PF01903; HMM-score: 123.1)and 2 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNGNIIVAHGMRHGRQNQALEAFISELVKDDIHHYDIAFLESEHQDLETVMTTLIQSGVDHFKIVPLLIFSAMHYLKDIPNIVHEMKRRYPDIKVEVSEPLGTHPLMRRLIEQRICDALAGDEQQVGVMVVAHGNINGKFTKAHEELQICAQNLQISKPTYARTLYGEISFTHDLESISKRYQKLIVVPLFLYDGRLVNKVKQQMNDMVINTDIHFTPSINFDPILKQIINDRLESLMIPMKI
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SACOL2396 < nirD < nirB < nirR
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available