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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005933000
- symbol?: nirR
- synonym:
- description?: cobalamin biosynthesis protein CbiX
- cobalamin biosynthesis protein CbiX
- nitrite reductase transcriptional regulator NirR
- CbiX/SirB-like chelatase, putative
- sirohydrochlorin chelatase
- transcriptional regulator NirR
- Sirohydrochlorin ferrochelatase
- cbiX family protein
- cobalamin (vitamin B12) biosynthesis CbiX protein
- fumarate and nitrate reduction regulatory protein
- NirR protein
- Regulatory protein
- sirohydrochlorin cobalt chelatase
- Sirohydrochlorin cobaltochelatase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5999878..6000618
- synteny block?: BlockID0046770
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2338 (nirR)
08BA02176:
C248_2448 (nasR)
11819-97:
MS7_2416
6850:
RSAU_002239
71193:
ST398NM01_2454
ECT-R 2:
ECTR2_2260
ED133:
SAOV_2447c
ED98:
SAAV_2466 (nirR)
HO 5096 0412:
SAEMRSA15_23000
JH1:
SaurJH1_2473
JH9:
SaurJH9_2425
JKD6008:
SAA6008_02442 (cbiX)
JKD6159:
SAA6159_02302 (cbiX)
LGA251:
SARLGA251_21830
M013:
M013TW_2362
MRSA252:
SAR2490
MSHR1132:
SAMSHR1132_22290
MSSA476:
SAS2292
Mu3:
SAHV_2385
Mu50:
SAV2401
MW2:
MW2323
RF122:
SAB2281c
ST398:
SAPIG2454
T0131:
SAT0131_02592 (pyrF)
TCH60:
HMPREF0772_10786 (nirR)
TW20:
SATW20_25310
USA300_TCH1516:
USA300HOU_2383 (nirR)
VC40:
SAVC_10875
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNGNIIVAHGMRHGRQNQALEAFISELVKDDIHHYDIAFLESEHQDLETVMTTLIQSGVD
N315 MNGNIIVAHGMRHGRQNQALEAFISELVKDDIHHYDIAFLESEHQDLETVMTTLIQSGVD
NCTC8325 MNGNIIVAHGMRHGRQNQALEAFISELVKDDIHHYDIAFLESEHQDLETVMTTLIQSGVD
Newman MNGNIIVAHGMRHGRQNQALEAFISELVKDDIHHYDIAFLESEHQDLETVMTTLIQSGVD
USA300_FPR3757 MNGNIIVAHGMRHGRQNQALEAFISELVKDDIHHYDIAFLESEHQDLETVMTTLIQSGVD
************************************************************
COL HFKIVPLLIFSAMHYLKDIPNIVHEMKRRYPDIKVEVSEPLGTHPLMRRLIEQRICDALA
N315 HFKIVPLLIFSAMHYLKDIPNIVHEMKRRYPDIKVEVSEPLGTHPLMRRLIEQRICDALA
NCTC8325 HFKIVPLLIFSAMHYLKDIPNIVHEMKRRYPDIKVEVSEPLGTHPLMRRLIEQRICDALA
Newman HFKIVPLLIFSAMHYLKDIPNIVHEMKRRYPDIKVEVSEPLGTHPLMRRLIEQRICDALA
USA300_FPR3757 HFKIVPLLIFSAMHYLKDIPNIVHEMKRRYPDIKVEVSEPLGTHPLMRRLIEQRICDALA
************************************************************
COL GDEQQVGVMVVAHGNINGKFTKAHEELQICAQNLQISKPTYARTLYGEISFTHDLESISK
N315 GDEQQVGVMVVAHGNINGNFTKAHEELQICAQHLQINKPTYARTLYGEISFTHDLESISK
NCTC8325 GDEQQVGVMVVAHGNINGKFTKAHEELQICAQNLQISKPTYARTLYGEISFTHDLESISK
Newman GDEQQVGVMVVAHGNINGKFTKAHEELQICAQNLQISKPTYARTLYGEISFTHDLESISK
USA300_FPR3757 GDEQQVGVMVVAHGNINGKFTKAHEELQICAQNLQISKPTYARTLYGEISFTHDLESISK
******************:*************:***.***********************
COL RYQKLIVVPLFLYDGRLVNKVKQQMNDMVINTDIHFTPSINFDPILKQIINDRLESLMIP
N315 RYQKLIVVPLFLYDGRLVNKVKQQMNDMVINTDIHFTPSINFDPILKQIINDRLESLMIP
NCTC8325 RYQKLIVVPLFLYDGRLVNKVKQQMNDMVINTDIHFTPSINFDPILKQIINDRLESLMIP
Newman RYQKLIVVPLFLYDGRLVNKVKQQMNDMVINTDIHFTPSINFDPILKQIINDRLESLMIP
USA300_FPR3757 RYQKLIVVPLFLYDGRLVNKVKQQMNDMVINTDIHFTPSINFDPILKQIINDRLESLMIP
************************************************************
COL MKI
N315 MKI
NCTC8325 MKI
Newman MKI
USA300_FPR3757 MKI
***