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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1944 [new locus tag: SACOL_RS10165 ]
  • pan locus tag?: SAUPAN004901000
  • symbol: SACOL1944
  • pan gene symbol?: vraT
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1944 [new locus tag: SACOL_RS10165 ]
  • symbol: SACOL1944
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2006600..2007301
  • length: 702
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGACACACAAATATATATCAACGCAAATGTTGATCATTTTTACTGCATTAATGATTATT
    GCCAATTTTTACTACATATTTTTTGAAAAAATTGGCTTTTTACTCGTTCTATTATTGGGA
    TGTGTATTAGTTTATGTAGGATATCTTTATTTTCATAAAATACGTGGCCTTTTGGCGTTT
    TGGATAGGCGCGCTATTAATTGCATTCACATTATTGTCTAATAAGTATACAATCATCATC
    TTGTTCGTCTTTTTATTATTACTTATTGTGCGTTATTTAATACACAAGTTTAAACCAAAA
    AAAGTAGTTGCGACGGATGAGGTTATGACTTCACCATCTTTTATTAAACAAAAGTGGTTT
    GGTGAGCAACGTACACCAGTTTATGTATATAAGTGGGAAGATGTACAAATTCAACATGGA
    ATTGGCGACCTACATATTGACTTAACAAAAGCTGCAAATATTAAGGAAAATAATACCATT
    GTTGTTAGACACATTTTAGGTAAAGTGCAGGTTATATTGCCGGTTAATTACAATATTAAT
    TTACATGTAGCTGCTTTTTATGGAAGTACTTACGTGAATGAAAAATCATATAAAGTTGAA
    AATAACAATATTCATATTGAAGAAATGATGAAACCGGATAACTATACAGTTAATATCTAC
    GTATCAACGTTTATCGGAGACGTAGAGGTGATTTATCGATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    702

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL1944 [new locus tag: SACOL_RS10165 ]
  • symbol: SACOL1944
  • description: hypothetical protein
  • length: 233
  • theoretical pI: 9.49778
  • theoretical MW: 27204.1
  • GRAVY: 0.479399

⊟Function[edit | edit source]

  • TIGRFAM:
    flavivirus envelope glycoprotein E, stem/anchor domain (TIGR04240; HMM-score: 9.2)
  • TheSEED  :
    • Membrane protein LiaF(VraT), specific inhibitor of LiaRS(VraRS) signaling pathway
    CBSS-176280.1.peg.1561  Transporter associated with VraSR
  • PFAM:
    no clan defined DUF2154; Cell wall-active antibiotics response 4TMS YvqF (PF09922; HMM-score: 109.1)
    and 2 more
    MerC; MerC mercury resistance protein (PF03203; HMM-score: 8.9)
    SdpI; SdpI/YhfL protein family (PF13630; HMM-score: 6.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.0013
    • TAT(Tat/SPI): 0.00021
    • LIPO(Sec/SPII): 0.07494
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Integral membrane [1] [2]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Susan Boyle-Vavra, Shouhui Yin, Dae Sun Jo, Christopher P Montgomery, Robert S Daum
VraT/YvqF is required for methicillin resistance and activation of the VraSR regulon in Staphylococcus aureus.
Antimicrob Agents Chemother: 2013, 57(1);83-95
[PubMed:23070169] [WorldCat.org] [DOI] (I p)

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