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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0354 [new locus tag: SACOL_RS01780 ]
- pan locus tag?: SAUPAN001471000
- symbol: SACOL0354
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL0354 [new locus tag: SACOL_RS01780 ]
- symbol: SACOL0354
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 370100..370447
- length: 348
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3236947 NCBI
- RefSeq: YP_185246 NCBI
- BioCyc: see SACOL_RS01780
- MicrobesOnline: 911825 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301ATGATGTTGAAATTTAAAGCTTGGGATAAAGATAAAAAAGTTATGAGTATTATTGACGAA
ATCGATTTTAATAGTGGGTACATTTTGATTTCAACAGGTTATAAAAGTTTCAATGAAGTA
AAACTATTACAATACACAGGATTTAAAGATGTGCACGGTGTGGAGATTTATGAAGGGGAT
ATTGTTCAAGATTGTTATTCGAGAGAAGTAAGTTTTATCGAGTTTAAAGAAGGAGCCTTT
TATATAACTTTTAGCAATGTAACTGAATTACTAAGTGAAAATGACGATATTATTGAAATT
GTTGGAAATATTTTTGAAAATGAGATGCTATTGGAGGTTATGAGATGA60
120
180
240
300
348
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL0354 [new locus tag: SACOL_RS01780 ]
- symbol: SACOL0354
- description: hypothetical protein
- length: 115
- theoretical pI: 4.117
- theoretical MW: 13436.3
- GRAVY: -0.0478261
⊟Function[edit | edit source]
- TIGRFAM: Hypothetical proteins Conserved phage conserved hypothetical protein TIGR01671 (TIGR01671; HMM-score: 42.2)Mobile and extrachromosomal element functions Prophage functions phage conserved hypothetical protein TIGR01671 (TIGR01671; HMM-score: 42.2)
- TheSEED :
- Phage protein
- PFAM: no clan defined YopX; YopX protein (PF09643; HMM-score: 70.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004016
- TAT(Tat/SPI): 0.000105
- LIPO(Sec/SPII): 0.000602
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MMLKFKAWDKDKKVMSIIDEIDFNSGYILISTGYKSFNEVKLLQYTGFKDVHGVEIYEGDIVQDCYSREVSFIEFKEGAFYITFSNVTELLSENDDIIEIVGNIFENEMLLEVMR
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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