PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA1302 [new locus tag: SA_RS07365 ]
• pan locus tag^?: SAUPAN003930000
• symbol: gerCC
• pan gene symbol^?: hepT
• synonym:
• product: heptaprenyl diphosphate syntase component II

⊟Additional information (user-provided)

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA1302 [new locus tag: SA_RS07365 ]
• symbol: gerCC
• product: heptaprenyl diphosphate syntase component II
• replicon: chromosome
• strand: -
• coordinates: 1508018..1508977
• length: 960
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1124141 NCBI
• RefSeq: NP_374584 NCBI
• BioCyc: see SA_RS07365
• MicrobesOnline: 103610 MicrobesOnline

⊟Phenotype

⊟Additional information (user-provided)

⊟DNA sequence

• 1
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  GTGGCAAAGTTAAACATGAACAATGAAATTAAGAAAGTGGAACAACGACTTGAAAAGGCA
  ATAAAAAGTAAAGATTCTGTATTAGAACAGGCATCATTACACTTATTGTCTTCTGGTGGT
  AAAAGAGTACGCCCAGCATTTGTTATTCTGAGTAGCCAATTTGGCAAAGATGAACAAACG
  TCTGAACAAACGTATCAAGTTGCAGTCGCATTAGAGTTAATTCATATGGCAACACTTGTT
  CATGATGACGTTATTGATAAAAGCGACAAGCGTCGAGGCAAGTTAACCATATCAAAGAAA
  TGGGATCAGACAACTGCTATTTTAACTGGGAATTTTTTATTGGCATTAGGACTTGAACAC
  TTAATGGCCGTTAAAGATAATCGTGTACATCAATTGATATCTGAATCTATCGTTGATGTT
  TGTAGAGGGGAACTTTTCCAATTTCAAGACCAATTTAACAGTCAACAGACAATTATTAAT
  TATTTACGACGTATCAATCGCAAAACAGCACTGTTAATTCAAATATCAACTGAAGTTGGT
  GCAATTACTTCTCAATCTGATAAAGAGACTGTACGAAAATTGAAAATGATTGGTCATTAT
  ATAGGTATGAGCTTCCAAATCATTGATGATGTATTAGACTTCACAAGTACCGAAAAGAAA
  TTAGGTAAGCCGGTCGGAAGTGATTTGCTTAATGGTCATATTACGTTACCGATTTTATTA
  GAAATGCGTAAAAATCCAGACTTCAAATTGAAAATCGAACAGTTACGTCGTGATAGTGAA
  CGCAAAGAATTTGAAGAATGTATCCAAATCATTAGAAAATCTGACAGCATCGATGAGGCT
  AAGGCAGTAAGTTCGAAGTATTTAAGTAAAGCTTTGAATTTGATTTCTGAGTTACCAGAT
  GGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGGTCAAGAAACACATAG
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⊟Protein

⊟General

• locus tag: SA1302 [new locus tag: SA_RS07365 ]
• symbol: GerCC
• description: heptaprenyl diphosphate syntase component II
• length: 319
• theoretical pI: 9.89584
• theoretical MW: 36142.6
• GRAVY: -0.351411

⊟Function

• TIGRFAM:
  Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone heptaprenyl diphosphate synthase component II (TIGR02748; EC 2.5.1.30; HMM-score: 378.6)
  and 1 more
  Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone solanesyl diphosphate synthase (TIGR02749; EC 2.5.1.-; HMM-score: 242.5)
• TheSEED  :
  • Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)
  Fatty Acids, Lipids, and Isoprenoids Isoprenoids Isoprenoid scratch  Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)
  and 3 more
  Fatty Acids, Lipids, and Isoprenoids Isoprenoids Isoprenoinds for Quinones  Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)
  Fatty Acids, Lipids, and Isoprenoids Isoprenoids Polyprenyl Diphosphate Biosynthesis  Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)
  Regulation and Cell signaling Regulation and Cell signaling - no subcategory Sex pheromones in Enterococcus faecalis and other Firmicutes  Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)
• PFAM:
  Terp_synthase (CL0613) polyprenyl_synt; Polyprenyl synthetase (PF00348; HMM-score: 238.2)
  and 4 more
  HEPPP_synt_1; Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 (PF07307; HMM-score: 28.4)
  bHLH (CL0827) bHLH_INO2; INO2 bHLH domain (PF23179; HMM-score: 17.9)
  no clan defined Baculo_p33; Baculovirus P33 (PF05214; HMM-score: 16.5)
  NADP_Rossmann (CL0063) Pyr_redox_3; Pyridine nucleotide-disulphide oxidoreductase (PF13738; HMM-score: 14.1)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 9.97
  • Cytoplasmic Membrane Score: 0
  • Cellwall Score: 0.01
  • Extracellular Score: 0.02
  • Internal Helices: 0
• DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.8691
  • Cytoplasmic Membrane Score: 0.1195
  • Cell wall & surface Score: 0.0014
  • Extracellular Score: 0.01
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.006431
  • TAT(Tat/SPI): 0.001573
  • LIPO(Sec/SPII): 0.000712
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15927051 NCBI
• RefSeq: NP_374584 NCBI
• UniProt: A0A0H3JQ36 UniProt

⊟Additional information (user-provided)

⊟Protein sequence

• MAKLNMNNEIKKVEQRLEKAIKSKDSVLEQASLHLLSSGGKRVRPAFVILSSQFGKDEQTSEQTYQVAVALELIHMATLVHDDVIDKSDKRRGKLTISKKWDQTTAILTGNFLLALGLEHLMAVKDNRVHQLISESIVDVCRGELFQFQDQFNSQQTIINYLRRINRKTALLIQISTEVGAITSQSDKETVRKLKMIGHYIGMSFQIIDDVLDFTSTEKKLGKPVGSDLLNGHITLPILLEMRKNPDFKLKIEQLRRDSERKEFEECIQIIRKSDSIDEAKAVSSKYLSKALNLISELPDGHPKSLLLSLTKKMGSRNT

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell: data available for COL
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: ndk < gerCC < ubiE < SA1304

⊟Regulation

• regulator:

⊟Additional information (user-provided)

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Additional information (user-provided)

⊟Other information (user-provided)

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications