PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA0109 [new locus tag: SA_RS00700 ]
• pan locus tag^?: SAUPAN000911000
• symbol: sirC
• pan gene symbol^?: sirC
• synonym:
• product: lipoprotein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA0109 [new locus tag: SA_RS00700 ]
• symbol: sirC
• product: lipoprotein
• replicon: chromosome
• strand: -
• coordinates: 125543..126460
• length: 918
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1122883 NCBI
• RefSeq: NP_373350 NCBI
• BioCyc: see SA_RS00700
• MicrobesOnline: 102376 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
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  421
  481
  541
  601
  661
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  901
  
  ATGATGATTGGTTCAAGCTTTATACCATTACAACGCGTACTGATGTACTTTATAAATCCA
  AATGACAGTATGGATCAATTCACTTTAGAAGTATTACGCTTACCTCGCATTACACTTGCG
  ATTTTAGCAGGTGCCGCACTAGGAATGAGTGGTTTAATGTTGCAAAATGTATTAAAAAAT
  CCAATTGCCTCACCTGATATTATCGGTATCACAGGTGGTGCTAGCTTAAGTGCTGTTGTC
  TTTATTGCATTTTTCAGCCATTTAACGATACATTTACTTCCACTATTTGCAGTATTAGGT
  GGCGCAGTTGCAATGATGATACTATTAGTGTTTCAAACGAAAGGACAAATACGCCCGACA
  ATACTCATAATCATCGGTATTTCGATGCAAACGTTGTTTATTGCGCTTGTCCAAGGATTA
  CTCATTACAACGAAGCAATTATCTGCTGCCAAAGCTTATACATGGCTAGTCGGAAGTCTT
  TACGGTGCTACGTTTAAAGATACAATCATTTTGGGTATGGTTATTTTAGCTGTTGTGCCG
  TTGTTATTTCTTGTTATACCAAAAATGAAAATATCTATACTTGATGACCCTGTAGCGATT
  GGCTTAGGCTTACATGTACAACGTATGAAACTAATCCAATTAATCACTTCTACTATACTC
  GTATCTATGGCAATCAGTTTAGTAGGTAACATTGGGTTTGTCGGTTTAATCGCACCACAT
  ATCGCGAAAACAATCGTTCGCGGAAGTTATGCTAAAAAGTTACTAATGTCAGCAATGATT
  GGTGCCATATCAATTGTTATTGCAGACTTAATTGGGCGTACCTTATTCTTGCCTAAAGAA
  GTGCCAGCAGGTGTATTTATTGCTGCTTTTGGTGCCCCATTCTTCATATACTTATTATTA
  ACCGTGAAAAAGTTATAA
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  918
  

⊟Protein

⊟General

• locus tag: SA0109 [new locus tag: SA_RS00700 ]
• symbol: SirC
• description: lipoprotein
• length: 305
• theoretical pI: 10.7701
• theoretical MW: 32651.9
• GRAVY: 1.16492

⊟Function

• TIGRFAM:
  proposed F420-0 ABC transporter, permease protein (TIGR03869; HMM-score: 149.5)
  and 1 more
  Metabolism Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, permease subunit (TIGR03770; HMM-score: 28.9)
• TheSEED  :
  • Siderophore staphylobactin ABC transporter, permease protein SirC
  Iron acquisition and metabolism Siderophores Siderophore Staphylobactin  Siderophore staphylobactin ABC transporter, permease protein SirC
• PFAM:
  Membrane_trans (CL0142) FecCD; FecCD transport family (PF01032; HMM-score: 273.3)
  and 1 more
  ABC-3; ABC 3 transport family (PF00950; HMM-score: 20.1)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 8
• LocateP: Multi-transmembrane
  • Prediction by SwissProt Classification: Membrane
  • Pathway Prediction: Sec-(SPI)
  • Intracellular possibility: 0.17
  • Signal peptide possibility: -0.5
  • N-terminally Anchored Score: -1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.008254
  • TAT(Tat/SPI): 0.001146
  • LIPO(Sec/SPII): 0.001699
• predicted transmembrane helices (TMHMM): 8

⊟Accession numbers

• GI: 15925817 NCBI
• RefSeq: NP_373350 NCBI
• UniProt: A0A0H3JSC2 UniProt

⊟Protein sequence

• MMIGSSFIPLQRVLMYFINPNDSMDQFTLEVLRLPRITLAILAGAALGMSGLMLQNVLKNPIASPDIIGITGGASLSAVVFIAFFSHLTIHLLPLFAVLGGAVAMMILLVFQTKGQIRPTILIIIGISMQTLFIALVQGLLITTKQLSAAKAYTWLVGSLYGATFKDTIILGMVILAVVPLLFLVIPKMKISILDDPVAIGLGLHVQRMKLIQLITSTILVSMAISLVGNIGFVGLIAPHIAKTIVRGSYAKKLLMSAMIGAISIVIADLIGRTLFLPKEVPAGVFIAAFGAPFFIYLLLTVKKL

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: sirC < sirB < sirA

⊟Regulation

• regulator: Fur* (repression) regulon

  Fur*

  (TF)

  important in Iron homeostasis; RegPrecise

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications

Suzanne E Dale, M Tom Sebulsky, David E Heinrichs
Involvement of SirABC in iron-siderophore import in Staphylococcus aureus.
J Bacteriol: 2004, 186(24);8356-62
[PubMed:15576785] [WorldCat.org] [DOI] (P p)