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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1212 [new locus tag: NWMN_RS06815 ]
- pan locus tag?: SAUPAN003619000
- symbol: NWMN_1212
- pan gene symbol?: hfq
- synonym:
- product: RNA chaperone, host factor-1 protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1212 [new locus tag: NWMN_RS06815 ]
- symbol: NWMN_1212
- product: RNA chaperone, host factor-1 protein
- replicon: chromosome
- strand: +
- coordinates: 1338596..1338829
- length: 234
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5332132 NCBI
- RefSeq: YP_001332246 NCBI
- BioCyc:
- MicrobesOnline: 3706764 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGATTGCAAACGAAAACATCCAAGACAAAGCACTAGAGAATTTTAAAGCAAACCAAACT
GAAGTAACTGTATTCTTTCTAAACGGTTTCCAAATGAAAGGTGTTATTGAAGAATACGAC
AAGTATGTCGTAAGCTTAAATTCTCAAGGCAAACAACACTTGATTTACAAACATGCGATC
AGCACTTATACAGTAGAAACTGAAGGTCAAGCATCTACTGAAAGTGAAGAATAA60
120
180
234
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1212 [new locus tag: NWMN_RS06815 ]
- symbol: NWMN_1212
- description: RNA chaperone, host factor-1 protein
- length: 77
- theoretical pI: 4.39044
- theoretical MW: 8778.67
- GRAVY: -0.544156
⊟Function[edit | edit source]
- TIGRFAM: Regulatory functions Other RNA chaperone Hfq (TIGR02383; HMM-score: 104.1)
- TheSEED :
- RNA-binding protein Hfq
- ⊞PFAM: SH3 (CL0010) Hfq; Hfq protein (PF17209; HMM-score: 90.3)and 4 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MIANENIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQGKQHLIYKHAISTYTVETEGQASTESEE
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available