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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003619000
- symbol?: hfq
- synonym:
- description?: RNA-binding protein Hfq
- RNA-binding protein Hfq
- RNA chaperone, host factor-1 protein
- RNA chaperone Hfq
- hfq protein
- host factor 1 protein
- host factor-I protein Hfq
- hfq protein, putative
- host factor-1
- phage-related host factor-I protein
- RNA-binding protein, Hfq family
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3957836..3958069
- synteny block?: BlockID0026900
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1261 (hfq)
08BA02176:
C248_1338 (hfq)
11819-97:
MS7_1261 (hfq)
6850:
RSAU_001187 (hfq)
71193:
ST398NM01_1306
ECT-R 2:
ECTR2_1161 (hfq)
ED133:
SAOV_1305
ED98:
SAAV_1278
HO 5096 0412:
SAEMRSA15_11380
JH1:
SaurJH1_1389
JH9:
SaurJH9_1363
JKD6008:
SAA6008_01258 (hfq)
JKD6159:
SAA6159_01158 (hfq)
LGA251:
SARLGA251_12140 (hfq)
M013:
M013TW_1245
MRSA252:
SAR1279
MSHR1132:
SAMSHR1132_11460
MSSA476:
SAS1237
Mu3:
SAHV_1294
Mu50:
SAV1305
MW2:
MW1187
RF122:
SAB1165
ST398:
SAPIG1306 (hfq)
T0131:
SAT0131_01360
TCH60:
HMPREF0772_11922 (hfq)
TW20:
SATW20_12970 (hfq)
USA300_TCH1516:
USA300HOU_1235 (hfq)
VC40:
SAVC_05715
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIANENIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQGKQHLIYKHAI
N315 MIANENIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQGKQHLIYKHAI
NCTC8325 MIANENIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQGKQHLIYKHAI
Newman MIANENIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQGKQHLIYKHAI
USA300_FPR3757 MIANENIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQGKQHLIYKHAI
************************************************************
COL STYTVETEGQASTESEE
N315 STYTVETEGQASTESEE
NCTC8325 STYTVETEGQASTESEE
Newman STYTVETEGQASTESEE
USA300_FPR3757 STYTVETEGQASTESEE
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