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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001591
  • pan locus tag?: SAUPAN004191000
  • symbol: sel26
  • pan gene symbol?: —
  • synonym:
  • product: staphylococcal enterotoxin type 26

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001591
  • symbol: sel26
  • product: staphylococcal enterotoxin type 26
  • replicon: chromosome
  • strand: -
  • coordinates: 1625186..1625938
  • length: 753
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    TTGGGGGAGTTTGAAGTTAAATATTTAACAGGATTTATTTTAATATTATTGTTAGAAGGA
    ATTTTTACAAATTCAGCGAGTGCAATCGAATATTCAGACTTACATCATAAAAGTAAGTTT
    GATTCAAAGCGTCTAAGTAATGCTAAGATGTCATTCATCAATCCAACTCAGCTTGAAAAT
    AAAAACACAAAAGATAGACTGTTGAAGCATGATTTGTTATTTCATGACATGTTCGTAAAT
    GATGATTGGAAAAAGGATTTTAAAGTTGAATTTGAAAATGAGGCACTTTCAAAGAAATTT
    ATAAATAAGGATATCGATATATTTGCTGGAAATTATGGATACGGATGTCATGGGGGAGCA
    ACCAATAAAACGCAATGTAGTTATGGTGGTGTTACTTTAAGTGACAATAATAAGTACGAT
    GATTATAAGAATATACCTTGTAATTTATGGATTGACGGACATCAAGCAGAAATAGAATTA
    ACAGCAGTAAAAACGAAAAAGAAAATTGTTACCATTCAAGAATTAGATGTTCAATTAAGA
    AATTATTTGAATGAGAAGTATAAGTTGTACGAACAAGGTGGCGACATTGTTAAAGGGTAT
    GTTAAATATTATAATGATGATGAACAAAATGTAGAATATGATTTTTATAATTTAAATGGT
    GAGTATGGTCGTGAGGTATTAAAAATGTATGCTGATAATAAAACTATCAATAGTGACAAA
    TTGCATTTAGATATCTATTTATTCAAATCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    753

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001591
  • symbol: Sel26
  • description: staphylococcal enterotoxin type 26
  • length: 250
  • theoretical pI: 5.91919
  • theoretical MW: 29144.6
  • GRAVY: -0.6508

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    OB_enterotoxin (CL0658) Stap_Strp_toxin; Staphylococcal/Streptococcal toxin, OB-fold domain (PF01123; HMM-score: 108.8)
    Ubiquitin (CL0072) Stap_Strp_tox_C; Staphylococcal/Streptococcal toxin, beta-grasp domain (PF02876; HMM-score: 92.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0
    • Extracellular Score: 10
    • Internal Helix: 1
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0006
    • Cytoplasmic Membrane Score: 0.0036
    • Cell wall & surface Score: 0.0028
    • Extracellular Score: 0.9931
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 28 aa
    • SP(Sec/SPI): 0.654018
    • TAT(Tat/SPI): 0.008652
    • LIPO(Sec/SPII): 0.009638
    • Cleavage Site: CS pos: 28-29. ASA-IE. Pr: 0.6141
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MGEFEVKYLTGFILILLLEGIFTNSASAIEYSDLHHKSKFDSKRLSNAKMSFINPTQLENKNTKDRLLKHDLLFHDMFVNDDWKKDFKVEFENEALSKKFINKDIDIFAGNYGYGCHGGATNKTQCSYGGVTLSDNNKYDDYKNIPCNLWIDGHQAEIELTAVKTKKKIVTIQELDVQLRNYLNEKYKLYEQGGDIVKGYVKYYNDDEQNVEYDFYNLNGEYGREVLKMYADNKTINSDKLHLDIYLFKS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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