From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1559 [new locus tag: SAUSA300_RS08505 ]
  • pan locus tag?: SAUPAN004191000
  • symbol: SAUSA300_1559
  • pan gene symbol?: —
  • synonym:
  • product: putative enterotoxin type A

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1559 [new locus tag: SAUSA300_RS08505 ]
  • symbol: SAUSA300_1559
  • product: putative enterotoxin type A
  • replicon: chromosome
  • strand: -
  • coordinates: 1708167..1708871
  • length: 705
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    TTGTTAGAAGGAATTTTTACAAATTCAGCGAGTGCAATCGAATATTCAGACTTACATCAT
    AAAAGTAAGTTTGATTCAAAGCGTCTAAGTAATGCTAAGATGTCATTCATCAATCCAACT
    CAGCTTGAAAATAAAAACACAAACGATAGACTGTTGAAGCATGATTTGTTATTTCATGAC
    ATGTTCGTAAATGATGATTGGAAAAAGGATTTTAAAGTTGAATTTGAAAATGAGGCACTT
    TCAAAGAAATTTATAAATAAGGATATCGATATATTTGCTGGAAATTATGGATACGGATGT
    CATGGGGGAGCAACCAATAAAACGCAATGTAGTTATGGTGGTGTTACTTTAAGTGACAAT
    AATAAATACGATGATTATAAGAATATACCTTGTAATTTATGGATTGACGGACATCAAACA
    GAAATAGAACTAACTGCAGTAAAAACGAAAAAGAAAATTGTTACTATTCAAGAATTAGAG
    GTTCAATTAAGAAATTATTTGAATGAGAAGTATAAGTTGTACGAACAAGGTGGCGACATT
    GTTAAAGGGTATGTTAAATATTATAATGATGATGAACAAAATGTAGAATATGATTTTTAT
    AATTTAAATGGTGAGTATGGTCGTGAGGTATTAAAAATGTATGCTGATAATAAAACTATC
    AATAGTGACAAATTGCATTTAGATATCTATTTATTCAAATCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    705

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1559 [new locus tag: SAUSA300_RS08505 ]
  • symbol: SAUSA300_1559
  • description: putative enterotoxin type A
  • length: 234
  • theoretical pI: 5.91259
  • theoretical MW: 27337.4
  • GRAVY: -0.791026

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • enterotoxin family protein
  • PFAM:
    OB_enterotoxin (CL0658) Stap_Strp_toxin; Staphylococcal/Streptococcal toxin, OB-fold domain (PF01123; HMM-score: 110.1)
    Ubiquitin (CL0072) Stap_Strp_tox_C; Staphylococcal/Streptococcal toxin, beta-grasp domain (PF02876; HMM-score: 89.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0
    • Extracellular Score: 10
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.211
    • Cytoplasmic Membrane Score: 0.0011
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.7878
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002761
    • TAT(Tat/SPI): 0.000376
    • LIPO(Sec/SPII): 0.000412
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLEGIFTNSASAIEYSDLHHKSKFDSKRLSNAKMSFINPTQLENKNTNDRLLKHDLLFHDMFVNDDWKKDFKVEFENEALSKKFINKDIDIFAGNYGYGCHGGATNKTQCSYGGVTLSDNNKYDDYKNIPCNLWIDGHQTEIELTAVKTKKKIVTIQELEVQLRNYLNEKYKLYEQGGDIVKGYVKYYNDDEQNVEYDFYNLNGEYGREVLKMYADNKTINSDKLHLDIYLFKS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAUSA300_1559&oldid=99508"