From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1430 [new locus tag: SA_RS08070 ]
  • pan locus tag?: SAUPAN004191000
  • symbol: SA1430
  • pan gene symbol?: —
  • synonym: sel26
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1430 [new locus tag: SA_RS08070 ]
  • symbol: SA1430
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1632611..1633084
  • length: 474
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGTCCCAGCCTGTTTATCATTTATGTCTCGCTCTCAAATGTAAATTAATAATTGTTTTG
    GGGGAGTTTGAAGTTAAATATTTAACAGGATTTATTTTAATATTATTGTTAGAAGGAATT
    TTTACAAATTCAGCGAGTGCAATCGAATATTCAGACTTACATCATAAAAGTAAGTTTGAT
    TCAAAGCGTCTAAGTAATGCTAAGATGTCATTCATCAATCCAACTCAGCTTGAAAATAAA
    AACACAAACGATAGACTGTTGAAGCATGATTTGTTATTTCATGACATGTTCGTAAATGTT
    GCTTCGAAAAAGGATTTTAAAGTTGAATTCGAAAATGAGGCACTTTCAAAGAAATTTATA
    AATAAGAATATCGATATATATGCTGGAAGCTATAGCTATGAATGTCATGGGGGAGCAACC
    AATAAAACGCAATGTAGTTATGGTGGTGTTACTTTAAGTGACAATAATAAATAA
    60
    120
    180
    240
    300
    360
    420
    474


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1430 [new locus tag: SA_RS08070 ]
  • symbol: SA1430
  • description: hypothetical protein
  • length: 157
  • theoretical pI: 8.31523
  • theoretical MW: 17824.4
  • GRAVY: -0.235032

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • enterotoxin family protein
  • PFAM:
    OB_enterotoxin (CL0658) Stap_Strp_toxin; Staphylococcal/Streptococcal toxin, OB-fold domain (PF01123; HMM-score: 102.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0
    • Extracellular Score: 10
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0029
    • Cytoplasmic Membrane Score: 0.002
    • Cell wall & surface Score: 0.0011
    • Extracellular Score: 0.9941
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.5
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 5
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.144087
    • TAT(Tat/SPI): 0.003127
    • LIPO(Sec/SPII): 0.00189
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSQPVYHLCLALKCKLIIVLGEFEVKYLTGFILILLLEGIFTNSASAIEYSDLHHKSKFDSKRLSNAKMSFINPTQLENKNTNDRLLKHDLLFHDMFVNVASKKDFKVEFENEALSKKFINKNIDIYAGSYSYECHGGATNKTQCSYGGVTLSDNNK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SA1430&oldid=127690"