From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS04795 [old locus tag: SA0845 ]
  • pan locus tag?: SAUPAN003133000
  • symbol: SA_RS04795
  • pan gene symbol?: opp3B
  • synonym:
  • product: ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS04795 [old locus tag: SA0845 ]
  • symbol: SA_RS04795
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: +
  • coordinates: 958016..958942
  • length: 927
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (958016..958942) NCBI
  • BioCyc: SA_RS04795 BioCyc
  • MicrobesOnline: see SA0845

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGGGGAAATATATTTTCAAACGATTTATTTATATGCTTATTTCTTTATTTATTATTATT
    ACAATTACATTTTTCTTAATGAAATTAATGCCAGGTTCGCCATTTAACGATGCTAAATTA
    AATGCTGAACAAAAAGAAATTTTAAATGAAAAATATGGATTAAATGATCCTGTAGCTACG
    CAGTATTTACATTATTTAAAAAATGTTGTTACAGGCGATTTTGGTAATTCATTCCAGTAT
    CATAATCAACCTGTGTGGGATTTGATTAAACCGAGACTACTACCTTCTTTTGAAATGGGT
    CTTACAGCAATGTTCATCGGTGTGATACTGGGACTTATTTTAGGTGTTGCAGCAGCTACT
    AAACAAAATTCTTGGGTTGACTATACAACTACAGTTATTTCAGTTATTGCTGTATCTGTA
    CCATCTTTTGTACTTGCTGTACTTTTACAATATGTATTTGCAGTTAAATTAAGATGGTTC
    CCAGTAGCTGGATGGGAAGGTTTTTCGACCGCGGTATTACCGTCACTTGCATTATCTGCA
    GCTGTTTTAGCAACTGTCGCCAGATACATAAGAGCAGAGATGATAGAGGTATTAAGTTCA
    GACTATATTTTATTAGCGAGAGCTAAAGGTAATTCGACAATGCGTGTACTTTTTGGACAT
    GCACTTAGAAATGCTTTAATTCCAATTATTACAATTATCGTTCCCATGTTAGCAAGTATT
    TTAACAGGCACTTTAACAATTGAAAATATTTTTGGGGTTCCTGGATTAGGGGATCAATTC
    GTACGTTCAATTACAACAAATGATTTCTCAGTAATCATGGCAATCACACTATTATTTAGC
    ACACTGTTTATCGTTTCTATTTTTATTGTAGATATTTTGTACGGTGTGATAGATCCACGA
    ATTCGTGTTCAAGGAGGTAAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    927

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS04795 [old locus tag: SA0845 ]
  • symbol: SA_RS04795
  • description: ABC transporter permease
  • length: 308
  • theoretical pI: 9.822
  • theoretical MW: 34142.4
  • GRAVY: 0.719156

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikB (TIGR02789; EC 3.6.3.24; HMM-score: 228.4)
    and 2 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 19.6)
    Metabolism Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 15.3)
  • TheSEED: see SA0845
  • ⊞PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 130)
    and 3 more
    no clan defined BPD_transp_1_N; Binding-prot-dependent transport system membrane comp, N-term (PF19300; HMM-score: 38.1)
    NPCC; Nuclear pore complex component (PF08058; HMM-score: 10.3)
    Nup120_hel_sf (CL0833) NUP120_helical_2; Nucleoporin NUP120, helical domain (PF22114; HMM-score: 9.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 1
    • Cell wall & surface Score: 0
    • Extracellular Score: 0
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.294557
    • TAT(Tat/SPI): 0.003898
    • LIPO(Sec/SPII): 0.007787
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGKYIFKRFIYMLISLFIIITITFFLMKLMPGSPFNDAKLNAEQKEILNEKYGLNDPVATQYLHYLKNVVTGDFGNSFQYHNQPVWDLIKPRLLPSFEMGLTAMFIGVILGLILGVAAATKQNSWVDYTTTVISVIAVSVPSFVLAVLLQYVFAVKLRWFPVAGWEGFSTAVLPSLALSAAVLATVARYIRAEMIEVLSSDYILLARAKGNSTMRVLFGHALRNALIPIITIIVPMLASILTGTLTIENIFGVPGLGDQFVRSITTNDFSVIMAITLLFSTLFIVSIFIVDILYGVIDPRIRVQGGKK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SA_RS04795&oldid=98994"