PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003133000
• symbol^?: opp3B
• synonym:
• description^?: ABC transporter permease

  descriptions from strain specific annotations:

  • ABC transporter permease
  • oligopeptide ABC transporter permease
  • oligopeptide transport system permease
  • oligopeptide ABC transporter, permease protein
  • oligopeptide transport system permease OppB
  • Oligopeptide transport system permease protein oppB
  • binding--dependent transport system inner membrane component family protein
  • binding-protein-dependent transport system inner membrane protein
  • nickel ABC transporter
  • oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein
  • oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein, Opp3B
  • oligopeptide ABC transporter membrane protein
  • oligopeptide transport system permease protein
  • peptide ABC transporter permease
  • putative oligopeptide transport system permeaseprotein
• strand^?: +
• coordinates^?: 3516549..3517475
• synteny block^?: BlockID0022250
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0991 (oppB)
N315:
SA0845 (oppB)
NCTC8325:
SAOUHSC_00923
Newman:
NWMN_0856
USA300_FPR3757:
SAUSA300_0887 (oppB)
04-02981:
SA2981_0941 (oppB)
08BA02176:
C248_1009 (oppB1)
11819-97:
MS7_0941
6850:
RSAU_000860 (oppB1)
71193:
ST398NM01_0982
ECT-R 2:
ECTR2_841
ED133:
SAOV_0932
ED98:
SAAV_0947 (oppB)
HO 5096 0412:
SAEMRSA15_08150 (oppB)
JH1:
SaurJH1_1004
JH9:
SaurJH9_0985
JKD6008:
SAA6008_00939 (oppB)
JKD6159:
SAA6159_00843 (opp3B)
LGA251:
SARLGA251_09020 (oppB)
M013:
M013TW_0908
MRSA252:
SAR0949 (oppB)
MSHR1132:
SAMSHR1132_08340
MSSA476:
SAS0856
Mu3:
SAHV_0981 (oppB)
Mu50:
SAV0986 (oppB)
MW2:
MW0868 (oppB)
RF122:
SAB0852 (oppB)
ST398:
SAPIG0982
T0131:
SAT0131_01019
TCH60:
HMPREF0772_12259 (oppB)
TW20:
SATW20_09840 (oppB)
USA300_TCH1516:
USA300HOU_0944 (oppB1)
VC40:
SAVC_04100

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             --------------------------MKLMPGSPFNDAKLNAEQKEILNEKYGLNDPVAT
  N315            MGKYIFKRFIYMLISLFIIITITFFLMKLMPGSPFNDAKLNAEQKEILNEKYGLNDPVAT
  NCTC8325        MGKYIFKRFIYMLISLFIIITITFFLMKLMPGSPFNDAKLNAEQKEILNEKYGLNDPVAT
  Newman          MGKYIFKRFIYMLISLFIIITITFFLMKLMPGSPFNDAKLNAEQKEILNEKYGLNDPVAT
  USA300_FPR3757  MGKYIFKRFIYMLISLFIIITITFFLMKLMPGSPFNDAKLNAEQKEILNEKYGLNDPVAT
                                            **********************************
  
  COL             QYLHYLKNVVTGDFGNSFQYHNQPVWDLIKPRLLPSFEMGLTAMFIGVILGLILGVAAAT
  N315            QYLHYLKNVVTGDFGNSFQYHNQPVWDLIKPRLLPSFEMGLTAMFIGVILGLILGVAAAT
  NCTC8325        QYLHYLKNVVTGDFGNSFQYHNQPVWDLIKPRLLPSFEMGLTAMFIGVILGLILGVAAAT
  Newman          QYLHYLKNVVTGDFGNSFQYHNQPVWDLIKPRLLPSFEMGLTAMFIGVILGLILGVAAAT
  USA300_FPR3757  QYLHYLKNVVTGDFGNSFQYHNQPVWDLIKPRLLPSFEMGLTAMFIGVILGLILGVAAAT
                  ************************************************************
  
  COL             KQNSWVDYTTTVISVIAVSVPSFVLAVLLQYVFAVKLRWFPVAGWEGFSTAVLPSLALSA
  N315            KQNSWVDYTTTVISVIAVSVPSFVLAVLLQYVFAVKLRWFPVAGWEGFSTAVLPSLALSA
  NCTC8325        KQNSWVDYTTTVISVIAVSVPSFVLAVLLQYVFAVKLRWFPVAGWEGFSTAVLPSLALSA
  Newman          KQNSWVDYTTTVISVIAVSVPSFVLAVLLQYVFAVKLRWFPVAGWEGFSTAVLPSLALSA
  USA300_FPR3757  KQNSWVDYTTTVISVIAVSVPSFVLAVLLQYVFAVKLRWFPVAGWEGFSTAVLPSLALSA
                  ************************************************************
  
  COL             AVLATVARYIRAEMIEVLSSDYILLARAKGNSTMRVLFGHALRNALIPIITIIVPMLASI
  N315            AVLATVARYIRAEMIEVLSSDYILLARAKGNSTMRVLFGHALRNALIPIITIIVPMLASI
  NCTC8325        AVLATVARYIRAEMIEVLSSDYILLARAKGNSTMRVLFGHALRNALIPIITIIVPMLASI
  Newman          AVLATVARYIRAEMIEVLSSDYILLARAKGNSTMRVLFGHALRNALIPIITIIVPMLASI
  USA300_FPR3757  AVLATVARYIRAEMIEVLSSDYILLARAKGNSTMRVLFGHALRNALIPIITIIVPMLASI
                  ************************************************************
  
  COL             LTGTLTIENIFGVPGLGDQFVRSITTNDFSVIMAITLLFSTLFIVSIFIVDILYGVIDPR
  N315            LTGTLTIENIFGVPGLGDQFVRSITTNDFSVIMAITLLFSTLFIVSIFIVDILYGVIDPR
  NCTC8325        LTGTLTIENIFGVPGLGDQFVRSITTNDFSVIMAITLLFSTLFIVSIFIVDILYGVIDPR
  Newman          LTGTLTIENIFGVPGLGDQFVRSITTNDFSVIMAITLLFSTLFIVSIFIVDILYGVIDPR
  USA300_FPR3757  LTGTLTIENIFGVPGLGDQFVRSITTNDFSVIMAITLLFSTLFIVSIFIVDILYGVIDPR
                  ************************************************************
  
  COL             IRVQGGKK
  N315            IRVQGGKK
  NCTC8325        IRVQGGKK
  Newman          IRVQGGKK
  USA300_FPR3757  IRVQGGKK
                  ********