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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0423 [new locus tag: SA_RS02410 ]
  • pan locus tag?: SAUPAN002179000
  • symbol: SA0423
  • pan gene symbol?: sle1
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0423 [new locus tag: SA_RS02410 ]
  • symbol: SA0423
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 484941..485945
  • length: 1005
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    GTGCAAAAAAAAGTAATTGCAGCTATTATTGGGACAAGCGCGATTAGCGCTGTTGCGGCA
    ACTCAAGCAAATGCGGCTACAACTCACACAGTAAAACCGGGTGAATCAGTGTGGGCAATT
    TCAAATAAGTATGGGATTTCGATTGCTAAATTAAAGTCATTAAACAATTTAACATCTAAT
    CTAATTTTCCCAAACCAAGTACTAAAAGTATCTGGCTCAAGTAATTCTACGAGTAATAGT
    AGCCGTCCATCAACGAACTCAGGTGGCGGATCATACTACACAGTACAAGCAGGCGACTCA
    TTATCATTAATCGCATCAAAATATGGTACAACTTACCAAAACATTATGCGACTTAATGGT
    TTAAATAATTTCTTTATTTATCCAGGTCAAAAATTAAAAGTATCAGGTACTGCTAGCTCA
    AGTAACGCTGCGAGCAATAGTAGCCGTCCATCAACGAACTCAGGCGGTGGATCATACTAC
    ACAGTACAAGCAGGTGACTCATTGTCATTAATCGCATCAAAATATGGTACAACTTATCAA
    AAAATTATGAGCTTAAATGGCTTAAATAATTTCTTTATTTATCCGGGTCAAAAATTGAAA
    GTAACTGGTAATGCATCTACGAACTCAGGATCTGCAACAACTACGAATAGAGGTTACAAT
    ACACCAGTATTCAGTCACCAAAACTTATATACATGGGGTCAATGTACATATCATGTATTT
    AATCGTCGTGCTGAAATTGGTAAAGGTATTAGTACTTATTGGTGGAATGCTAATAACTGG
    GATAACGCAGCGGCAGCAGATGGTTACACTATCGACAATAGACCTACTGTAGGTTCTATC
    GCTCAAACAGATGTAGGTTATTATGGTCATGTTATGTTTGTAGAACGTGTAAATAACGAT
    GGTAGTATTTTAGTTTCAGAAATGAACTATTCAGCTGCACCAGGTATTTTAACTTACAGA
    ACGGTACCAGCTTACCAAGTAAATAATTATAGATATATTCACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1005

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0423 [new locus tag: SA_RS02410 ]
  • symbol: SA0423
  • description: hypothetical protein
  • length: 334
  • theoretical pI: 9.98873
  • theoretical MW: 35835.5
  • GRAVY: -0.326048

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 3.5.1.28?  ExPASy
    N-acetylmuramoyl-L-alanine amidase Hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides
  • ⊞TIGRFAM:
    Cellular processes Cellular processes Sporulation and germination spore coat assembly protein SafA (TIGR02899; HMM-score: 73.8)
    and 1 more
    Cellular processes Cellular processes Sporulation and germination stage VI sporulation protein D (TIGR02907; HMM-score: 35.4)
  • TheSEED  :
    • N-acetylmuramoyl-L-alanine amidase Sle1 (EC 3.5.1.28)
  • ⊞PFAM:
    LysM (CL0187) LysM; LysM domain (PF01476; HMM-score: 175)
    and 13 more
    Peptidase_CA (CL0125) CHAP; CHAP domain (PF05257; HMM-score: 71.5)
    LysM (CL0187) LysM3_LYK4_5; LYK4/5 LysM3 domain (PF23473; HMM-score: 56.5)
    LysM_RLK; LysM domain (PF23577; HMM-score: 26.7)
    LysM2_CERK1_LYK3_4_5; LYK3/4/5 LysM2 domain (PF23472; HMM-score: 25.8)
    LysM3_NFP; NFP LysM3 domain (PF23462; HMM-score: 23.9)
    OB (CL0021) DPOA2_OB; DNA polymerase alpha subunit B, OB domain (PF22062; HMM-score: 22.3)
    HTH (CL0123) HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 18.2)
    LysM (CL0187) NMB0315_dom_I; NMB0315-like, domain I (PF22310; HMM-score: 16.8)
    OB (CL0021) ID; Intracellular delivery domain (PF18543; HMM-score: 14.9)
    MBB (CL0193) Attacin_C; Attacin, C-terminal region (PF03769; HMM-score: 14)
    LysM (CL0187) LysM1_NFP_LYK; NFP/LYK LysM1 domain (PF23446; HMM-score: 13.6)
    Vault (CL0666) Vault_2; Major Vault Protein repeat domain (PF17794; HMM-score: 13.2)
    no clan defined SPOR; SPOR domain (PF05036; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cellwall
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 10
    • Extracellular Score: 0
    • Internal Helices: 0
  • ⊞DeepLocPro: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cell wall & surface Score: 0.0013
    • Extracellular Score: 0.9987
  • ⊞LocateP: Secretory(released) (with CS)
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: -0.17
    • Signal peptide possibility: 1
    • N-terminally Anchored Score: -2
    • Predicted Cleavage Site: TQANAATT
  • ⊞SignalP: Signal peptide SP(Sec/SPI) length 25 aa
    • SP(Sec/SPI): 0.994915
    • TAT(Tat/SPI): 0.003012
    • LIPO(Sec/SPII): 0.001437
    • Cleavage Site: CS pos: 25-26. ANA-AT. Pr: 0.9700
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQKKVIAAIIGTSAISAVAATQANAATTHTVKPGESVWAISNKYGISIAKLKSLNNLTSNLIFPNQVLKVSGSSNSTSNSSRPSTNSGGGSYYTVQAGDSLSLIASKYGTTYQNIMRLNGLNNFFIYPGQKLKVSGTASSSNAASNSSRPSTNSGGGSYYTVQAGDSLSLIASKYGTTYQKIMSLNGLNNFFIYPGQKLKVTGNASTNSGSATTTNRGYNTPVFSHQNLYTWGQCTYHVFNRRAEIGKGISTYWWNANNWDNAAAADGYTIDNRPTVGSIAQTDVGYYGHVMFVERVNNDGSILVSEMNYSAAPGILTYRTVPAYQVNNYRYIH

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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