PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_RS12800 [old locus tag: SAUSA300_2317 ]
• pan locus tag^?: SAUPAN005886000
• symbol: SAUSA300_RS12800
• pan gene symbol^?: —
• synonym:
• product: quinone oxidoreductase

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_RS12800 [old locus tag: SAUSA300_2317 ]
• symbol: SAUSA300_RS12800
• product: quinone oxidoreductase
• replicon: chromosome
• strand: +
• coordinates: 2491261..2492307
• length: 1047
• essential: unknown other strains

⊟Accession numbers

• Location: NC_007793 (2491261..2492307) NCBI
• BioCyc: SAUSA300_RS12800 BioCyc
• MicrobesOnline: see SAUSA300_2317

⊟Phenotype

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⊟DNA sequence

• 1
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  1021
  
  ATGGCCGTATTTTCAAAAGAGAAAAAGAGAGGATGTATCGTTGTGATAGAAACATTTAAA
  GCGTTTGTAATTGATAAAGATGAGAGTGGTAAAGTGACACCAACTTTCAAACAATTATCG
  CCTACTGATTTACCTAAAGGAGATGTGCTGATTAAAGTACATTACTCTGGTATAAATTAT
  AAAGATGCTTTAGCGACTCAAGATCATAATGCAGTCGTAAAATCGTATCCTATGATTCCA
  GGAATAGATTTAGCTGGAACAATTGTTGAATCCGAAGCACCAGGCTTTGAAAAAGGAGAA
  CAAGTAATTGTAACGAGTTATGACCTAGGTGTCAGCCATTATGGCGGTTTTAGTGAATAT
  GCGCGTGTAAAATCAGAATGGATTATCAAGCTTCCTGATACTTTAACATTAGAAGAATCA
  ATGATATATGGCACAGCTGGTTATACTGCCGGTTTAGCAATTGAAAGACTTGAAAAAGTT
  GGAATGAATATTGAAGATGGTCCTGTACTCGTTCGCGGTGCTTCAGGTGGTGTCGGTACT
  TTAGCAGTACTCATGCTTAATGAACTTGGTTATAAAGTTATCGCAAGTACAGGTAAACAA
  GATGTTAGCGATCAATTACTTGAACTTGGTGCCAAAGAAGTTATCGATCGACTTCCTGTT
  GAAGATGATCATAAAAAGCCACTCGCATCATCAACTTGGCAAGCTTGTGTAGACCCTGTT
  GGTGGCGAAGGTATTAATTATGTTACAAAGCGTTTAAATCATAGTGGGTCAATTGCAGTT
  ATTGGTATGACTGCCGGTAATACTTATACTAATTCTGTATTCCCTCACATTTTAAGAGGT
  GTAAACATTTTAGGAATTGACTCGGTATTTACTGCTATGAAATTAAGACAGCGCGTTTGG
  CGTCGTCTCGCAAAAGATTTAATGCCTGAAAATTTACATGAGATCAAGCAAGTTATTACA
  TTTGATGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATT
  GTTATCGATTTCGGTGTAGATAAATAG
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⊟Protein

⊟General

• locus tag: SAUSA300_RS12800 [old locus tag: SAUSA300_2317 ]
• symbol: SAUSA300_RS12800
• description: quinone oxidoreductase
• length: 348
• theoretical pI: 6.32425
• theoretical MW: 38115.6
• GRAVY: -0.0974138

⊟Function

• TIGRFAM:
  Unknown function Enzymes of unknown specificity putative quinone oxidoreductase, YhdH/YhfP family (TIGR02823; HMM-score: 449.7)
  and 8 more
  Unknown function Enzymes of unknown specificity putative NAD(P)H quinone oxidoreductase, PIG3 family (TIGR02824; HMM-score: 96.2)
  crotonyl-CoA carboxylase/reductase (TIGR01751; EC 1.3.1.85; HMM-score: 58.8)
  Metabolism Energy metabolism Fermentation zinc-binding alcohol dehydrogenase family protein (TIGR02817; HMM-score: 38.4)
  leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase (TIGR02825; EC 1.3.1.48,1.3.1.74; HMM-score: 36)
  Unknown function Enzymes of unknown specificity NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family (TIGR03989; EC 1.1.99.36; HMM-score: 30.6)
  Metabolism Energy metabolism Amino acids and amines L-threonine 3-dehydrogenase (TIGR00692; EC 1.1.1.103; HMM-score: 26.7)
  Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Chlorophyll and bacteriochlorphyll chlorophyll synthesis pathway protein BchC (TIGR01202; HMM-score: 24.2)
  6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase (TIGR03201; EC 1.1.1.-; HMM-score: 12.7)
• TheSEED: see SAUSA300_2317
• PFAM:
  NADP_Rossmann (CL0063) ADH_zinc_N; Zinc-binding dehydrogenase (PF00107; HMM-score: 47.2)
  and 4 more
  GroES (CL0296) ADH_N; Alcohol dehydrogenase GroES-like domain (PF08240; HMM-score: 34.1)
  NADP_Rossmann (CL0063) ADH_zinc_N_2; Zinc-binding dehydrogenase (PF13602; HMM-score: 15.4)
  GroES (CL0296) ADH_N_2; N-terminal domain of oxidoreductase (PF16884; HMM-score: 13.5)
  NADP_Rossmann (CL0063) ELFV_dehydrog; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase (PF00208; HMM-score: 11.8)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.006704
  • TAT(Tat/SPI): 0.000185
  • LIPO(Sec/SPII): 0.001224
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 487704938 NCBI
• RefSeq: WP_001789170 NCBI
• UniProt: see SAUSA300_2317

⊟Protein sequence

• MAVFSKEKKRGCIVVIETFKAFVIDKDESGKVTPTFKQLSPTDLPKGDVLIKVHYSGINYKDALATQDHNAVVKSYPMIPGIDLAGTIVESEAPGFEKGEQVIVTSYDLGVSHYGGFSEYARVKSEWIIKLPDTLTLEESMIYGTAGYTAGLAIERLEKVGMNIEDGPVLVRGASGGVGTLAVLMLNELGYKVIASTGKQDVSDQLLELGAKEVIDRLPVEDDHKKPLASSTWQACVDPVGGEGINYVTKRLNHSGSIAVIGMTAGNTYTNSVFPHILRGVNILGIDSVFTAMKLRQRVWRRLAKDLMPENLHEIKQVITFDELPEQLNKVIKHENKGRIVIDFGVDK

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell: data available for COL
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: data available for COL

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications