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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS02190 [old locus tag: SAUSA300_0408 ]
- pan locus tag?: SAUPAN002130000
- symbol: SAUSA300_RS02190
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS02190 [old locus tag: SAUSA300_0408 ]
- symbol: SAUSA300_RS02190
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 461338..462846
- length: 1509
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (461338..462846) NCBI
- BioCyc: SAUSA300_RS02190 BioCyc
- MicrobesOnline: see SAUSA300_0408
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1501ATGAGGGAAAATTTTAAGTTACGTAAAATGAAAGTCGGTTTAGTATCTGTTGCAATTACA
ATGTTATATATTATGACAAACGGACAAGCAGAAGCATCTGAAAATCAAAACGCTTTAATC
TCTAATATAAATGTAGACAATCAGGAAAAACAGAATAATGTAAATCAAGCTGTTCAGCCT
CAAAATAATACTAATGAAACATCAAAAGTACCGGCTAATTTTGTCAAATTGAATGATATT
AAACCAGGTGATACTTCTATACAAGGAACAACTTTACCAAATCAATTTATACTATTAACT
ATTGATAAAAAAGATGTGAGCTCAGTTGAAGATTCTGACAGCAGCTTTGTTATGTCTGAT
AAAGATGGGAATTTTAAGTATGACTTAAATGGTCGCAAAATTGTTCATAATCAAGAAATT
GAAGTGTCTTCATCAGATCCCTATTTAGGTGACGATGAAGAAGATGAAGAAGTAGAAGAA
ACTTCAACTGAAGAAGTTGGTGCTGAGGAAGAAAGTACAGAAGCTAAAGCTACATATACA
ACACCGCGATATGAAAAAGCGTATGAAATACCGAAAGAACAGCTAAAAGAAAAAGATGGA
CATCACCAAGTTTTTATCGAACCTATTACTGAAGGTTCAGGTATTATTAAAGGCCATACC
TCTGTAAAAGGTAAAGTTGCTCTATCTATTAATAATAAATTTATTAACTTTGAGACAAAT
GCTAATGGTGGTCCAAATAAAGAAGAAGCGAAATCTGGATCAGAAGGAATCTGGATGCCT
ATTGATGACAAAGGATACTTTAATTTTGACTTCAAAACGAAACGTTTCGATGATTTAGAG
TTAAAGAAAAATGATGAGATCTCATTAACATTTGCACCTGATGACGAAGATGAGGCATTG
AAGTCATTAATTTTCAAAACTAAGGTAACGAGTTTAGAAGATATTGATAAAGCAGAAACT
AAATATGACCATACTAAAGTGGAAAAAGTAAAAGTATTGAAAGATGTTAAAGAAGATTTA
CATGTAGATGAAATTTACGGAAGCTTATATCATACAGAAAAAGGTAAAGGTATTCTTGAT
AAAGAAGGTACTAAAGTAATTAAAGGTAAGACTAAATTCGCAAATGCAGTTGTGAAGGTA
GACTCTGAACTAGGTGAAGGTCAAGAATTCCCTGATTTGCAAGTCGATGAAAAAGGTGAA
TTCAGCTTTGATGTAGATCATGCTGGATTTAGATTACAAAATGGAGAAACACTAAACTTC
ACAGTAGTTGATCCTATTACAGGTGAATTATTAAGTGGAAATTTTGTTTCTAAAAACATA
GATATTTATGAATCTCCTGAAGAAAAAGCAGATCGTGAGTTTGATGAAAGAATGGAAAAC
ACACCTGCATATCATAAATTACATGGTGATAAAATTGTCGGCTACGATACTAACGGATTC
CCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTA
GAAAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS02190 [old locus tag: SAUSA300_0408 ]
- symbol: SAUSA300_RS02190
- description: hypothetical protein
- length: 502
- theoretical pI: 4.51591
- theoretical MW: 56546.4
- GRAVY: -0.79243
⊟Function[edit | edit source]
- TIGRFAM: gram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 18.6)
- TheSEED: see SAUSA300_0408
- PFAM: Glutaminase_I (CL0014) PylD_N; Pyrrolysine biosynthesis protein PylD, N-terminal domain (PF21455; HMM-score: 16.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 3.33
- Cellwall Score: 3.33
- Extracellular Score: 3.33
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0081
- Cytoplasmic Membrane Score: 0.0167
- Cell wall & surface Score: 0.4824
- Extracellular Score: 0.4927
- LocateP:
- SignalP: Signal peptide SP(Sec/SPI) length 32 aa
- SP(Sec/SPI): 0.993749
- TAT(Tat/SPI): 0.002136
- LIPO(Sec/SPII): 0.001777
- Cleavage Site: CS pos: 32-33. AEA-SE. Pr: 0.9502
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 447131656 NCBI
- RefSeq: WP_001208912 NCBI
- UniProt: see SAUSA300_0408
⊟Protein sequence[edit | edit source]
- MRENFKLRKMKVGLVSVAITMLYIMTNGQAEASENQNALISNINVDNQEKQNNVNQAVQPQNNTNETSKVPANFVKLNDIKPGDTSIQGTTLPNQFILLTIDKKDVSSVEDSDSSFVMSDKDGNFKYDLNGRKIVHNQEIEVSSSDPYLGDDEEDEEVEETSTEEVGAEEESTEAKATYTTPRYEKAYEIPKEQLKEKDGHHQVFIEPITEGSGIIKGHTSVKGKVALSINNKFINFETNANGGPNKEEAKSGSEGIWMPIDDKGYFNFDFKTKRFDDLELKKNDEISLTFAPDDEDEALKSLIFKTKVTSLEDIDKAETKYDHTKVEKVKVLKDVKEDLHVDEIYGSLYHTEKGKGILDKEGTKVIKGKTKFANAVVKVDSELGEGQEFPDLQVDEKGEFSFDVDHAGFRLQNGETLNFTVVDPITGELLSGNFVSKNIDIYESPEEKADREFDERMENTPAYHKLHGDKIVGYDTNGFPITWFYPLGEKKVERKAPKLEK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: SaeR see SAUSA300_0408
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]