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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005046000
- symbol?: —
- synonym:
- description?: phage tail protein
- phage tail protein
- bacteriophage tail protein
- phage tail fiber protein
- phi77 ORF004-like protein phage tail component
- phi PVL orfs 18-19-like protein
- phage protein
- phage tail family protein
- phi77 protein
- Phi PVL hypothetical protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5209420..5210739
- synteny block?: BlockID0039240
- occurrence?: in 71% of 34 strains
dit : serogroup F prophage tail distal baseplate hub-cap protein [1]
Staphylococcal prophage assemble their phage tails on a baseplate consisting of six distal baseplate hub-cap proteins. The tail tape measure protein is sequestered in the internal foramen of the hexamer and the capsid-proximal face of the baseplate nucleates major tail tube protein spiral polymerization. The serogroup F prophage tail spike protein attaches to the capsid-distal face of the baseplate hub-cap generating a mature phage tail.
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1915
08BA02176:
—
11819-97:
MS7_1986
6850:
RSAU_000609
71193:
ST398NM01_2918
ECT-R 2:
ECTR2_1826
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_18690
JH1:
SaurJH1_2045
JH9:
SaurJH9_2009
JKD6008:
SAA6008_02007
JKD6159:
SAA6159_01883
JSNZ:
—
LGA251:
—
M013:
—
MRSA252:
SAR2049
MSHR1132:
SAMSHR1132_17940
MSSA476:
SAS1877
Mu3:
SAHV_1940
Mu50:
SAV1954
MW2:
MW1894
RF122:
—
ST398:
—
T0131:
SAT0131_02086
TCH60:
HMPREF0772_11187
TW20:
SATW20_19460
USA300_TCH1516:
USA300HOU_1958
VC40:
—
⊟Genome Viewer[edit | edit source]
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
N315 MIDTIKVNNKTIPWLYVERGFEIPSFNYVLKTENVDGRSGSIYKGRRLESYSFDIPLVVR
NCTC8325 MQDTIQIDNKTIGWLVVQRGFEIPSFNFVTEKENVKGRAGSIVKNRYLNDIEFDLPLIIR
Newman MIDTIKVNNKTIPWLYVERGFEIPSFNYVLKTENVDGRSGSIYKGRRLESYSFDIPLVVR
USA300_FPR3757 MIDTIKVNNKTIPWLYVERGFEIPSFNYVLKTENVDGRSGSIYKGRRLESYSFDIPLVVR
* ***:::**** ** *:*********:* :.***.**:*** *.* *:. .**:**::*
N315 NDYLSHNGIKTHDDVLNELVKFFNYEEQV--KLQFKSKDWYWNAYFEGPIKLHKEFAIPV
NCTC8325 NEKLSPGGEKTHDDILEALVKFFNIKDLTPKKLKFKSQNWYWFAYFDGPLKLPKNPRGSV
Newman NDYLSHNGIKTHDDVLNELVKFFNYEEQV--KLQFKSKDWYWNAYFEGPIKLHKEFTIPV
USA300_FPR3757 NDYLSHNGFKTHDDVLNELVKFFNYEEQV--KLQFKSKDWYWNAYFEGPIKLHKEFAIPV
*: ** .* *****:*: ****** :: . **:***::*** ***:**:** *: .*
N315 KFTIKVVLTDPYKYSVTGNKNTAISDQVSVVNSGTADTPLIVEARAIKPSSYFMITKNDE
NCTC8325 KFTIKVVLTDPYKYSVTGNKNTAISDQVSVVNSGTADTPLIVEARAIKPSSYFMITKNDE
Newman KFTIKVVLTDPYKYSVTGNKNTAISDQVSVVNSGTADTPLIVEARAIKSSSYFMITKNDE
USA300_FPR3757 KFTIKVVLTDPYKYSVTGYKNTAISDQVSVVNSGTADTPLIVEARAIKPSSYFMITKNDE
****************** *****************************.***********
N315 DYFMVGDDEVTKEVKDYMPPVYHSEFRDFKGWTKMITEDIPSNDLGGKVGGDFVISNLGE
NCTC8325 DYFMVGDDEVTKEVKDYMPPVYHSEFRDFKGWTKMITEDIPSNDLGGKVGGDFVISNLGE
Newman DYFMVGDDEVTKEVKDYMPPVYHSEFRDFKGWTKMITEDIPSNDLGGKVGGDFVISNLGE
USA300_FPR3757 DYFMVGDDEVTKEVKDYMPPVYHSEFRDFKGWTKMITEDIPSNDLGGKVGGDFVISNLGE
************************************************************
N315 GYKATNFPDAKGWVGAGTKRGLPKAMTDFQITYKCIVEQKGKGAGRTAQHIYDSDGKLLA
NCTC8325 GYKATNFPDAKGWVGAGTKRGLPKAMTDFQITYKCIVEQKGKGAGRTAQHIYDSDGKLLA
Newman GYKATNFPDAKGWVGAGTKRGLPKAMTDFQITYKCIVEQKGKGAGRTAQHIYDSDGKLLA
USA300_FPR3757 GYKATNFSDAKGWVGAGTKRGLPKAMTDFQITYKCIVEQKGKGAGRTAQHIYDSDGKLLA
*******.****************************************************
N315 SIGYENKYHDRKIGHIVVTLYNQKGDPKKIYDYQNKPIMYNLDRIVVYMRLRRVGNKFSI
NCTC8325 SIGYENKYHDRKIGHIVVTLYNQKGDPKKIYDYQNKPIMYNLDRIVVYMRLRRVGNKFSI
Newman SIGYENKYHDRKIGHIVVTLYNQKGDPKKIYDYQNKPIMYNLDRIVVYMRLRRVGNKFSI
USA300_FPR3757 SIGYENKYHDRKIGHIVVTLYNQKGDPKKIYDYQNKPIMYNLDRIVVYMRLRRVGNKFSI
************************************************************
N315 KTWKFDHIKDPDRRKPIDMDEKEWIDGGKFYQRPASIIAIYSAKYNGYKWMEMNGLGSFN
NCTC8325 KTWKFDHIKDPDRRKPIDMDEKEWIDGGKFYQRPASIIAIYSAKYNGYKWMEMNGLGSFN
Newman KTWKFDHIKDPDRRKPIDMDEKEWIDGGKFYQRPASIIAIYSAKYNGYKWMEMNGLGSFN
USA300_FPR3757 KTWKFDHIKDPDRRKPIDMDEKEWIDGGKFYQRPASIIAIYSAKYNGYKWMEMNGLGSFN
************************************************************
N315 TEILPKPKGARDVIIQKGDLVKIDMQAKSVVINEEPMLSEKSFGSNYFNVDSGYSELIIQ
NCTC8325 TEILPKPKGARDVIIQKGDLVKIDMQAKSVVINEEPMLSEKSFGSNYFNVDSGYSELIIQ
Newman TEILPKPKGARDVIIQKGDLVKIDMQAKSVVINEEPMLSEKSFGSNYFNVDSGYSELIIQ
USA300_FPR3757 TEILPKPKGARDVIIQKGDLVKIDMQAKSVVINEEPMLSEKSFGSNYFNVDSGYSELIIQ
************************************************************
N315 PENVFDTTVKWQDRYL
NCTC8325 PENVFDTTVKWQDRYL
Newman PENVFDTTVKWQDRYL
USA300_FPR3757 PENVFDTTVKWQDRYL
****************
- ↑ Adeline Goulet, Joséphine Lai-Kee-Him, David Veesler, Isabelle Auzat, Gautier Robin, Dale A Shepherd, Alison E Ashcroft, Eric Richard, Julie Lichière, Paulo Tavares, Christian Cambillau, Patrick Bron
The opening of the SPP1 bacteriophage tail, a prevalent mechanism in Gram-positive-infecting siphophages.
J Biol Chem: 2011, 286(28);25397-405
[PubMed:21622577] [WorldCat.org] [DOI] (I p)James L Kizziah, Keith A Manning, Altaira D Dearborn, Terje Dokland
Structure of the host cell recognition and penetration machinery of a Staphylococcus aureus bacteriophage.
PLoS Pathog: 2020, 16(2);e1008314
[PubMed:32069326] [WorldCat.org] [DOI] (I e)