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NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_02181
- pan locus tag?: SAUPAN005046000
- symbol: SAOUHSC_02181
- pan gene symbol?: —
- synonym:
- product: phi PVL orfs 18-19-like protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAOUHSC_02181
- symbol: SAOUHSC_02181
- product: phi PVL orfs 18-19-like protein
- replicon: chromosome
- strand: -
- coordinates: 2042547..2044037
- length: 1491
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3919548 NCBI
- RefSeq: YP_500667 NCBI
- BioCyc: G1I0R-2061 BioCyc
- MicrobesOnline: 1290623 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1441ATGCAAGATACAATTCAAATAGACAATAAAACAATTGGATGGCTGGTTGTGCAAAGAGGG
TTCGAGATACCCTCTTTTAATTTTGTTACTGAAAAAGAAAACGTAAAAGGTAGAGCGGGA
TCTATTGTTAAGAATCGTTATTTAAATGATATCGAATTTGATTTACCATTAATTATTCGA
AACGAAAAATTGTCACCAGGTGGAGAAAAAACACACGATGATATATTAGAAGCATTGGTC
AAGTTCTTCAATATTAAAGATTTAACACCTAAAAAACTTAAATTCAAATCTCAAAACTGG
TATTGGTTTGCATATTTTGATGGTCCATTAAAATTACCGAAAAACCCAAGAGGTTCAGTG
AAGTTCACTATAAAAGTAGTGTTAACAGATCCTTATAAATACTCGGTAACTGGAAACAAA
AACACCGCGATTTCAGACCAAGTTTCAGTTGTAAATAGTGGGACTGCTGACACTCCTTTA
ATTGTTGAAGCCCGAGCAATTAAACCATCTAGTTACTTTATGATCACTAAAAATGATGAA
GATTATTTTATGGTTGGTGATGATGAGGTAACCAAAGAAGTTAAGGATTACATGCCTCCT
GTTTATCATAGTGAGTTTCGTGATTTCAAAGGTTGGACTAAGATGATTACTGAAGATATT
CCAAGTAATGATTTAGGTGGTAAGGTCGGCGGTGACTTTGTGATATCCAATCTTGGCGAA
GGATATAAAGCAACTAATTTTCCTGATGCAAAAGGTTGGGTTGGTGCTGGCACGAAACGA
GGGCTCCCTAAAGCGATGACAGATTTTCAAATTACCTATAAATGTATTGTTGAACAAAAA
GGTAAAGGTGCCGGAAGAACAGCACAACATATTTATGATAGTGATGGTAAGTTACTTGCT
TCTATTGGTTATGAAAATAAATATCATGATAGAAAAATAGGACATATTGTTGTTACGTTG
TATAACCAAAAAGGAGACCCCAAAAAGATATACGACTATCAGAATAAACCGATAATGTAT
AACTTGGACAGAATCGTTGTTTATATGCGGCTCAGAAGAGTAGGTAATAAATTTTCTATT
AAAACTTGGAAATTTGATCACATTAAAGACCCAGATAGACGTAAACCTATTGATATGGAT
GAGAAAGAGTGGATAGATGGCGGTAAGTTTTATCAGCGTCCAGCTTCTATCATAGCTATC
TATAGTGCGAAGTATAACGGTTATAAGTGGATGGAGATGAATGGATTAGGTTCATTCAAT
ACGGAGATTCTACCGAAACCGAAAGGCGCAAGGGATGTCATTATACAAAAAGGTGATTTA
GTGAAAATAGATATGCAAGCAAAAAGTGTTGTCATCAATGAGGAACCAATGTTGAGCGAG
AAATCGTTTGGAAGTAATTATTTCAATGTTGATTCTGGGTACAGTGAATTAATCATACAA
CCTGAAAACGTCTTTGATACGACGGTTAAATGGCAAGATAGATATTTATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_02181
- symbol: SAOUHSC_02181
- description: phi PVL orfs 18-19-like protein
- length: 496
- theoretical pI: 9.45726
- theoretical MW: 56828.6
- GRAVY: -0.550202
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0053
- Cytoplasmic Membrane Score: 0.0135
- Cell wall & surface Score: 0.0015
- Extracellular Score: 0.9797
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003728
- TAT(Tat/SPI): 0.000268
- LIPO(Sec/SPII): 0.001099
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MQDTIQIDNKTIGWLVVQRGFEIPSFNFVTEKENVKGRAGSIVKNRYLNDIEFDLPLIIRNEKLSPGGEKTHDDILEALVKFFNIKDLTPKKLKFKSQNWYWFAYFDGPLKLPKNPRGSVKFTIKVVLTDPYKYSVTGNKNTAISDQVSVVNSGTADTPLIVEARAIKPSSYFMITKNDEDYFMVGDDEVTKEVKDYMPPVYHSEFRDFKGWTKMITEDIPSNDLGGKVGGDFVISNLGEGYKATNFPDAKGWVGAGTKRGLPKAMTDFQITYKCIVEQKGKGAGRTAQHIYDSDGKLLASIGYENKYHDRKIGHIVVTLYNQKGDPKKIYDYQNKPIMYNLDRIVVYMRLRRVGNKFSIKTWKFDHIKDPDRRKPIDMDEKEWIDGGKFYQRPASIIAIYSAKYNGYKWMEMNGLGSFNTEILPKPKGARDVIIQKGDLVKIDMQAKSVVINEEPMLSEKSFGSNYFNVDSGYSELIIQPENVFDTTVKWQDRYL
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: [1]
Multi-gene expression profiles
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)