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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004876000
- symbol?: int2
- synonym:
- description?: phage family integrase
- phage family integrase
- phage integrase
- site-specific integrase
- prophage integrase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5074552..5075598
- synteny block?: BlockID0037960
- occurrence?: in 9% of 34 strains
int5 (intφSa5) : YfkAB-converting prophage site-specific integrase Sa5int [1]
This prophage integrase catalyzes insertion of prophages at the consensus attB sequence catwtaYAATGAYCCATGGGAAGcatwta within YfkAB, a protein of unknown function that may be involved in posttranslational modification of elongation factor P. This integrase can also catalyze insertion into degenerate sites resembling the consensus attB sequence within such genes as queE.
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
SAOV_1974
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
JSNZ:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
—
VC40:
—
⊟Genome Viewer[edit | edit source]
| NCTC8325 | |
| Newman |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
NCTC8325 MPVYKDDNTGKWYFSIRYKDVYGNNKRKMKRGFERKKDAKLAESEFIQNVKYGYSDNQPF
Newman MPVYKDDNTGKWYFSIRYKDVYGNNKRKMKRGFERKKDAKLAESEFIQNVKYGYSDNQPF
************************************************************
NCTC8325 EYIFFDRLKNENLSARSIEKRTTEYNTHIKERFGNIPIGKITTTQCTAFRNYLLNDAGLS
Newman EYIFFNRLKNENLSARSIEKRTTEYNTHIKERFGNIPIGKITTTQCTAFRNYLLNDAGLS
*****:******************************************************
NCTC8325 VDYARSVWAGFKAVINYAKKHYKLLYDPTLSVTPIPRTKPQAKFITREEFDEKVEQITND
Newman VGYARSVWAGFKAVINYAKKHYKLLYDPTLSVTPIPRTKPQAKFITREEFDEKVEQITND
*.**********************************************************
NCTC8325 TSRQLTRLLFYSGLRIGEALALQWKDYDKIKGEIDVNKKINLSNRKIEYNLKKESSKGII
Newman TSRQLTKLLFYSGLRIGEALALQWKDYDKIKGEIDVNKKINLSNREIEYNLKKESSKGII
******:**************************************:**************
NCTC8325 PVPNLIREMLKNMYNESSKRYKYFDENYFIFGGLEPIRYVTYSYHFKSVFPNLKIHHLRH
Newman PVPKLIREMLKNMYNESSKRYKYFDENYFIFGGLEPIRYVTYSYHFKSVFPNLKIHHLRH
***:********************************************************
NCTC8325 SYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD
Newman SYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMNIFD
********************************************.***
- ↑ Christiane Goerke, Roman Pantucek, Silva Holtfreter, Berit Schulte, Manuel Zink, Dorothee Grumann, Barbara M Bröker, Jiri Doskar, Christiane Wolz
Diversity of prophages in dominant Staphylococcus aureus clonal lineages.
J Bacteriol: 2009, 191(11);3462-8
[PubMed:19329640] [WorldCat.org] [DOI] (I p)