PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary[edit | edit source]

pan ID^?: SAUPAN004876000
symbol^?: int2
synonym:
description^?: phage family integrase
- phage family integrase
- phage integrase
- site-specific integrase
- prophage integrase
strand^?: +
coordinates^?: 5074552..5075598
synteny block^?: BlockID0037960
occurrence^?: in 9% of 33 strains

⊟Orthologs[edit | edit source]

COL:

—

N315:

—

NCTC8325:

SAOUHSC_02089

Newman:

NWMN_1814 (int)

USA300_FPR3757:

—

04-02981:

—

08BA02176:

—

11819-97:

—

6850:

—

71193:

—

ECT-R 2:

—

ED133:

SAOV_1974

ED98:

—

HO 5096 0412:

—

JH1:

—

JH9:

—

JKD6008:

—

JKD6159:

—

LGA251:

—

M013:

—

MRSA252:

—

MSHR1132:

—

MSSA476:

—

Mu3:

—

Mu50:

—

MW2:

—

RF122:

—

ST398:

—

T0131:

—

TCH60:

—

TW20:

—

USA300_TCH1516:

—

VC40:

—

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

alignment of orthologues:
CLUSTAL format alignment by MAFFT L-INS-i (v7.307)

NCTC8325        MPVYKDDNTGKWYFSIRYKDVYGNNKRKMKRGFERKKDAKLAESEFIQNVKYGYSDNQPF
Newman          MPVYKDDNTGKWYFSIRYKDVYGNNKRKMKRGFERKKDAKLAESEFIQNVKYGYSDNQPF
                ************************************************************

NCTC8325        EYIFFDRLKNENLSARSIEKRTTEYNTHIKERFGNIPIGKITTTQCTAFRNYLLNDAGLS
Newman          EYIFFNRLKNENLSARSIEKRTTEYNTHIKERFGNIPIGKITTTQCTAFRNYLLNDAGLS
                *****:******************************************************

NCTC8325        VDYARSVWAGFKAVINYAKKHYKLLYDPTLSVTPIPRTKPQAKFITREEFDEKVEQITND
Newman          VGYARSVWAGFKAVINYAKKHYKLLYDPTLSVTPIPRTKPQAKFITREEFDEKVEQITND
                *.**********************************************************

NCTC8325        TSRQLTRLLFYSGLRIGEALALQWKDYDKIKGEIDVNKKINLSNRKIEYNLKKESSKGII
Newman          TSRQLTKLLFYSGLRIGEALALQWKDYDKIKGEIDVNKKINLSNREIEYNLKKESSKGII
                ******:**************************************:**************

NCTC8325        PVPNLIREMLKNMYNESSKRYKYFDENYFIFGGLEPIRYVTYSYHFKSVFPNLKIHHLRH
Newman          PVPKLIREMLKNMYNESSKRYKYFDENYFIFGGLEPIRYVTYSYHFKSVFPNLKIHHLRH
                ***:********************************************************

NCTC8325        SYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD
Newman          SYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMNIFD
                ********************************************.***

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⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

NCTC8325
Newman

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⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]