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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004862000
- symbol?: —
- synonym:
- description?: radical SAM/CxCxxxxC motif protein YfkAB
- radical SAM/CxCxxxxC motif protein YfkAB
- YfkA/YfkB-like protein
- conserved protein YfkA
- dehydrogenase
- putative Fe-S oxidoreductase
- radical SAM superfamily domain protein
- radical SAM superfamily protein
- Thioredoxin-like oxidoreductase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5067361..5076794
- synteny block?: BlockID0037910
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1833
08BA02176:
C248_1949
11819-97:
MS7_1912
6850:
RSAU_001764
71193:
ST398NM01_1970
ECT-R 2:
ECTR2_1748
ED133:
SAOV_1975
ED98:
SAAV_1927
HO 5096 0412:
SAEMRSA15_17840
JH1:
SaurJH1_1965
JH9:
SaurJH9_1931
JKD6008:
SAA6008_01897
JKD6159:
SAA6159_01808
LGA251:
SARLGA251_17590
M013:
M013TW_1913
MRSA252:
SAR1967
MSHR1132:
SAMSHR1132_17220
MSSA476:
SAS1799
Mu3:
SAHV_1862
Mu50:
SAV1877
MW2:
MW1817
RF122:
SAB1809
ST398:
SAPIG1970
T0131:
SAT0131_02000
TCH60:
HMPREF0772_11267
TW20:
SATW20_18710
USA300_TCH1516:
USA300HOU_1872
VC40:
SAVC_08640
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNSVKLKQPVSIYNDPWEAYNDVKEHGQLTLSNIEFTTTNLCNMRCSHCAVGYTLQTVDP
N315 MNSVKLKQPVSIYNDPWESYNDVKEHGQLTLSNIEFTTTNLCNMRCSHCAVGYTLQTVDP
NCTC8325 MRNN--KPKISIQNDPWEAYNDVKEHGQLTLSNIEFTTTNLCNMRCSHCAVGYTLQTVDP
Newman MRNN--KPKIRIHNDPWEAYNDVKEHGQLTLSNIEFTTTNLCNMRCSHCAVGYTLQTVDP
USA300_FPR3757 MNSVKLKQPVSIYNDPWEAYNDVKEHGQLTLSNIEFTTTNLCNMRCSHCAVGYTLQTVDP
*.. * : * *****:*****************************************
COL EPLDMDLIYRRLDEIPNLRTMSITGGEPMFSKKSIRNVVKPLLKYAHHRGIYTQMNSNLT
N315 EPLDMDLIYRRLDEIPNLRTMSITGGEPMFSKKSIRNVVKPLLKYAHHRGIYTQMNSNLT
NCTC8325 EPLDMDLIYRRLDEIPNLRTMSITGGEPMFSKKSIRNVVKPLLKYAHHRGIYTQMNSNLT
Newman EPLDMDLIYRRLDEIPNLRTMSITGGEPMFSKKSIRNVVKPLLKYAHHRGIYTQMNSNLT
USA300_FPR3757 EPLDMDLIYRRLDEIPNLRTMSITGGEPMFSKKSIRNVVKPLLKYAHHRGIYTQMNSNLT
************************************************************
COL LPQDRYLDIAEYIDVMHISHNWGTTDEFANVGFGAMKKQPPLKAKLKLYEQMISNARTLS
N315 LPQDRYLDIAEYIDVMHISHNWGTTDEFANVGFGAMKKQPPLKAKLKLYEQMISNARTLS
NCTC8325 LPQDRYLDIAEYIDVMHISHNWGTTDEFANVGFGAMKKQPPLKAKLKLYEQMISNARTLS
Newman LPQDRYLDIAEYIDVMHISHNWGTTDEFANVGFGAMKKQPPLKAKLKLYEQMISNARTLS
USA300_FPR3757 LPQDRYLDIAEYIDVMHISHNWGTTDEFANVGFGAMKKQPPLKAKLKLYEQMISNARTLS
************************************************************
COL EQGMFVSAETMLNQSTLPHLRKIHQEVVHDMKCSRHEIHPMYPADFASQLNVLTLAEMKK
N315 EQGMFVSAETMLNQSTLPHLRKIHQEVVHDMKCSRHEIHPMYPADFASQLNVLTLAEMKK
NCTC8325 EQGMFVSAETMLNQSTLPHLRKIHQEVVHDMKCSRHEIHPMYPADFASQLNVLTLAEMKK
Newman EQGMFVSAETMLNQSTLPHLRKIHQEVVHDMKCSRHEIHPMYPADFASQLNVLTLAEMKK
USA300_FPR3757 EQGMFVSAETMLNQSTLPHLRKIHQEVVHDMKCSRHEIHPMYPADFASQLNVLTLAEMKK
************************************************************
COL TIHDILDFRDEDIWMLFGTLPVFPCLKDDEDQKLLSRLRNAKNVTTRNDPDGRSRLNVNV
N315 TIHDILDFRDEDIWMLFGTLPVFPCLKDDEDQKLLSRLRNANNVTTRNDPDGRSRLNVNV
NCTC8325 TIHDILDFRDEDIWMLFGTLPVFPCLKDDEDQKLLSRLRNAKNVTTRNDPDGRSRLNVNV
Newman TIHDILDFRDEDIWMLFGTLPVFPCLKDDEDQKLLSRLRNAKNVTTRNDPDGRSRLNVNV
USA300_FPR3757 TIHDILDFRDEDIWMLFGTLPVFPCLKDDEDQKLLSRLRNAKNVTTRNDPDGRSRLNVNV
*****************************************:******************
COL FTGNVIVTDFGDETGTISNIQKDKLTDVFDKWLSSDLAKSLNCHCSEFSCLGPNVLVKNM
N315 FTGNVIVTDFGDETGTISNIQKDKLTDVFDKWLSSDLAKSLNCHCSEFSCLGPNVLVKNM
NCTC8325 FTGNVIVTDFGDETGTISNIQKDKLTDVFDKWLSSDLAKSLNCHCSEFSCLGPNVLVKNM
Newman FTGNVIVTDFGDETGTISNIQKDKLTDVFDKWLSSDLAKSLNCHCSEFSCLGPNVLVKNM
USA300_FPR3757 FTGNVIVTDFGDETGTISNIQKDKLTDVFDKWLSSDLAKSLNCHCSEFSCLGPNVLVKNM
************************************************************
COL YYPNMDFKDNERHMHKQPQIIQF
N315 YYPNMDFKDNERHMHKQPQIIQF
NCTC8325 YYPNMDFKDNERHMHKQPQIIQF
Newman YYPNMDFKDNERHMHKQPQIIQF
USA300_FPR3757 YYPNMDFKDNERHMHKQPQIIQF
***********************