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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003708000
- symbol?: rpmG2
- synonym:
- description?: 50S ribosomal protein L33
- 50S ribosomal protein L33
- ribosomal protein L33
- 50S ribosomal protein L33p
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4012851..4013009
- synteny block?: BlockID0027740
- occurrence?: in 100% of 34 strains
rpmG2 : 50S ribosomal protein L33 [1]
• Two crystal structures are available : 6YEF , 5ND8
Staphylococci have two copies of rpmG. rpmG1 is next to the gene encoding penicillin binding protein 3 while rpmG2 is next to the gene encoding catalase. Although 90% identical / 94% similar, the two paralogues often differ at positions 30, 35, 37, 39 and 42. Although both forms appear to be functional in ribosomes and found in crystal structures, it appears that only rpmG1 is essential.
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1290 (rpmG)
08BA02176:
C248_1371 (rpmG2)
11819-97:
MS7_1294
6850:
RSAU_001217 (rpmG2)
71193:
ST398NM01_1337
ECT-R 2:
ECTR2_1194 (rpmG)
ED133:
SAOV_1348
ED98:
SAAV_1315 (rpmG)
HO 5096 0412:
SAEMRSA15_11820 (rpmG2)
JH1:
SaurJH1_1423 (rpmG)
JH9:
SaurJH9_1396 (rpmG)
JKD6008:
SAA6008_01301 (rpmG_1)
JKD6159:
SAA6159_01202 (rpmG_1)
JSNZ:
JSNZ_001319 (rpmG)
LGA251:
SARLGA251_12440 (rpmG2)
M013:
M013TW_1283
MRSA252:
SAR1345 (rpmG)
MSHR1132:
SAMSHR1132_11800
MSSA476:
SAS1275 (rpmG)
Mu3:
SAHV_1324 (rpmG)
Mu50:
SAV1335 (rpmG)
MW2:
MW1222 (rpmG)
RF122:
SAB1193 (rpmG)
ST398:
SAPIG1337 (rpmG)
T0131:
SAT0131_01406
TCH60:
HMPREF0772_11873 (rpmG2)
TW20:
SATW20_13370 (rpmG2)
USA300_TCH1516:
USA300HOU_1278 (rpmG)
VC40:
SAVC_05915 (rpmG)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRVNVTLACTECGDRNYITTKNKRNNPERIEMKKYCPRLNKYTLHRETK
N315 MRVNVTLACTECGDRNYITTKNKRNNPERIEMKKYCPRLNKYTLHRETK
NCTC8325 MRVNVTLACTECGDRNYITTKNKRNNPERIEMKKYCPRLNKYTLHRETK
Newman MRVNVTLACTECGDRNYITTKNKRNNPERIEMKKYCPRLNKYTLHRETK
USA300_FPR3757 MRVNVTLACTECGDRNYITTKNKRNNPERIEMKKYCPRLNKYTLHRETK
*************************************************
- ↑ José Francisco Sanchez-Herrero, Manuel Bernabeu, Alejandro Prieto, Mário Hüttener, Antonio Juárez
Gene Duplications in the Genomes of Staphylococci and Enterococci.
Front Mol Biosci: 2020, 7;160
[PubMed:32850954] [WorldCat.org] [DOI] (P e)Alexander Golubev, Bulat Fatkhullin, Iskander Khusainov, Lasse Jenner, Azat Gabdulkhakov, Shamil Validov, Gulnara Yusupova, Marat Yusupov, Konstantin Usachev
Cryo-EM structure of the ribosome functional complex of the human pathogen Staphylococcus aureus at 3.2 Å resolution.
FEBS Lett: 2020, 594(21);3551-3567
[PubMed:32852796] [WorldCat.org] [DOI] (I p)