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⊟Summary[edit | edit source]
- pan ID?: SAUPAN000976000
- symbol?: capC
- synonym:
- description?: capsular polysaccharide biosynthesis protein Cap8C
- capsular polysaccharide biosynthesis protein Cap8C
- capsular polysaccharide biosynthesis protein Cap5C
- capsular polysaccharide biosynthesis protein CapC
- capsular polysaccharide synthesis enzyme CapC
- capsular polysaccharide synthesis protein Cap8C
- tyrosine-protein phosphatase
- Capsular polysaccharide synthesis enzyme Cap5C
- putative tyrosine-protein phosphatase capC
- capsular polysaccharide synthesis enzyme Cap8C
- Manganese-dependent protein-tyrosine phosphatase
- phosphotyrosine-protein phosphatase (capsular polysaccharide biosynthesis)
- PHP domain-containing protein
- protein-tyrosine-phosphatase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1231996..1232760
- synteny block?: BlockID0005100
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0152 (capC)
08BA02176:
C248_0140 (capC)
11819-97:
MS7_0145
6850:
RSAU_000105 (capC1)
71193:
ST398NM01_0165
ECT-R 2:
ECTR2_108
ED133:
SAOV_0098
ED98:
SAAV_0119 (cap5C)
HO 5096 0412:
SAEMRSA15_01170 (capC)
JH1:
SaurJH1_0142
JH9:
SaurJH9_0137
JKD6008:
SAA6008_00129 (cap5C)
JKD6159:
SAA6159_00135 (cap5C)
LGA251:
SARLGA251_01250 (capC)
M013:
M013TW_0141
MRSA252:
SAR0153 (capC)
MSHR1132:
SAMSHR1132_01250
MSSA476:
SAS0126
Mu3:
SAHV_0150 (capC)
Mu50:
SAV0151 (capC)
MW2:
MW0126 (cap8C)
RF122:
SAB0092 (capC)
ST398:
SAPIG0165
T0131:
SAT0131_00141
TCH60:
HMPREF0772_10347 (epsC)
TW20:
SATW20_01620 (capC)
USA300_TCH1516:
USA300HOU_0165 (cap5C)
VC40:
SAVC_00525
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIDIHNHILPNIDDGPTNETEMMDLLKQATTQGVTEIIVTSHHLHPRYTTPIEKVKSCLN
N315 MIDIHNHILPNIDDGPTNETEMMDLLKQATTQGVTEIIVTSHHLHPRYTTPIEKVKSCLN
NCTC8325 MIDIHNHILPNIDDGPTNETEMMDLLKQATTQGVTEIIVTSHHLHPRYTTPIEKVKSCLN
Newman MIDIHNHILPNIDDGPTNETEMMDLLKQATTQGVTEIIVTSHHLHPRYTTPIEKVKSCLN
USA300_FPR3757 MIDIHNHILPNIDDGPTNETEMMDLLKQATTQGVTEIIVTSHHLHPRYTTPIEKVKSCLN
************************************************************
COL HIESLEEVQALNLKFYYGQEIRITDQILNDIDRKVINGINDSRYLLIEFPSNEVPHYTDQ
N315 HIESLEEVQALNLKFYYGQEIRITDQILNDIDRKVITGINDSRYLLIEFPSNEVPHYTDQ
NCTC8325 HIESLEEVQALNLKFYYGQEIRITDQILNDIDRKVINGINDSRYLLIEFPSNEVPHYTDQ
Newman HIESLEEVQALNLKFYYGQEIRITDQILNDIDRKVINGINDSRYLLIEFPSNEVPHYTDQ
USA300_FPR3757 HIESLEEVQALNLKFYYGQEIRITDQILNDIDRKVINGINDSRYLLIEFPSNEVPHYTDQ
************************************.***********************
COL LFFELQSKGFVPIIAHPERNKAISQNLDILYDLINKGALSQVTTASLAGISGKKIRKLAI
N315 LFFELQSKGFVPIIAHPERNKAISQNLDILYDLINKGALSQVTTASLAGISGKKIRKLAI
NCTC8325 LFFELQSKGFVPIIAHPERNKAISQNLDILYDLINKGALSQVTTASLAGISGKKIRKLAI
Newman LFFELQSKGFVPIIAHPERNKAISQNLDILYDLINKGALSQVTTASLAGISGKKIRKLAI
USA300_FPR3757 LFFELQSKGFVPIIAHPERNKAISQNLDILYDLINKGALSQVTTASLAGISGKKIRKLAI
************************************************************
COL QMIENNLTHFIGSDAHNTEIRPFLMKDLFNDKKLRDYYEDMNGFISNAKLVVDDKKIPKR
N315 QMIENNLTHFIGSDAHNTEIRPFLMKDLFNDKKLRDYYEDMNGFISNAKLVVDDKKIPKR
NCTC8325 QMIENNLTHFIGSDAHNTEIRPFLMKDLFNDKKLRDYYEDMNGFISNAKLVVDDKKIPKR
Newman QMIENNLTHFIGSDAHNTEIRPFLMKDLFNDKKLRDYYEDMNGFISNAKLVVDDKKIPKR
USA300_FPR3757 QMIENNLTHFIGSDAHNTEIRPFLMKDLFNDKKLRDYYEDMNGFISNAKLVVDDKKIPKR
************************************************************
COL MPQQDYKQKRWFGL
N315 MPQQDYKQKRWFGL
NCTC8325 MPQQDYKQKRWFGL
Newman MPQQDYKQKRWFGL
USA300_FPR3757 MPQQDYKQKRWFGL
**************