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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_02229
- pan locus tag?: SAUPAN005175000
- symbol: SAOUHSC_02229
- pan gene symbol?: —
- synonym:
- product:
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: pseudogene
- locus tag: SAOUHSC_02229
- symbol: SAOUHSC_02229
- product:
- replicon: chromosome
- strand: -
- coordinates: 2069455..2070204
- length: 750
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 3919652 NCBI
- RefSeq:
- BioCyc: G1I0R-2107 BioCyc
- MicrobesOnline: 1290670 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721ATGCAAGCATTAAAAACAAAATCGAACATCGGCGAAATGTTCAACATACAAGAAAAAGAA
AATGGAGAAATCGCAATAAGTGCAAGAGAGTTATATAAAGCTTTGGAAGTTAAAAAGCGT
TTTAGCGCTTGGGCAGAAATTAACTTGAAGCATTTCAAAGAAAATAGGGATTTTACAAGT
GTACTTACAAGTACGGTTGTTAATAACGGAGCTGTAAGACAACTAGAAGATTATGCTTTA
ACACTTGATGTAGCTAAACATGTTGCGATGATGTCAGGTACAGAAAAAGGTTTTGATTTT
AGAGAGTATTTCATCCAAGTAGAGAAAGCATGGAACAGTCCAGAAATGATTATGTAACGT
GCTTTAAAAATTGCTAACAACACAATCAATCAATTAGAAACAAAGATTGAACGTGATAAA
CCAAAAATTGTATTTGCAGATGCAGTAGCTACTACTAAGACATCAATTTTAGTTGGAGAG
TTAGCAAAGATCATTAAACAAAACGGTATAAACATCGGGCAACGCAGATTGTTTGAGTGG
TTACGTCAAAACGGATTCCTTATTAAACGCAAGGGTGTGGATTATAACATGCCTACACAG
TATTCAATGGAACGTGAGTTATTCGAAATTAAAGAAACATCAATCACACATTCGGACGGT
CATACATCAATTAGTAAGACGCCAAAAGTAACAGGCAAAGGACAACAATACTTTGTTAAT
AAGTTTTTAGGAGAAAAACAAACATCTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_02229
- symbol: SAOUHSC_02229
- description:
- length:
- theoretical pI:
- theoretical MW:
- GRAVY:
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb:
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP:
- predicted transmembrane helices (TMHMM):
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- predicted SigA promoter [1] : SAOUHSC_02219 < SAOUHSC_02220 < SAOUHSC_02221 < SAOUHSC_02222 < SAOUHSC_02223 < SAOUHSC_02224 < SAOUHSC_02225 < S859 < SAOUHSC_02227 < SAOUHSC_02228 < SAOUHSC_02229 < S861 < SAOUHSC_02233 < SAOUHSC_02234
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: [1]
Multi-gene expression profiles
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ 1.0 1.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)