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NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01726
  • pan locus tag?: SAUPAN004221000
  • symbol: SAOUHSC_01726
  • pan gene symbol?: mnmA
  • synonym:
  • product:

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: pseudogene
  • locus tag: SAOUHSC_01726
  • symbol: SAOUHSC_01726
  • product:
  • replicon: chromosome
  • strand: -
  • coordinates: 1631841..1632958
  • length: 1119
  • essential: yes [1] DEG other strains
  • comment: The sequence of SAOUHSC_01726 was corrected based on the resequencing performed by Berscheid et al., 2012 [2].

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    TTGTCAAATAAAGATATACGTGTTGTCGTTGGTATGTCAGGCGGTGTAGATAGTTCTGTA
    ACAGCCCACGTCTTAAAAGAACAAGGTTATGATGTCATTGGCATATTTATGAAAAACTGG
    GATGACACTGACGAAAATGGCGTATGTACTGCAACTGAAGATTACAACGATGTTATTGAA
    GTGTGTAATCAAATTGGCATTCCGTATTACGCTGTTAATTTTGAAAAAGAATATTGGGAT
    AAAGTCTTTACGTATTTCTTAGATGAATACAAAAAAGGTCGTACTCCAAATCCAGACGTT
    ATGTGTAATAAAGAAATTAAGTTTTAAAGCCTTTTAGATCATGCGATGAATTTAGGTGCA
    GATTATGTAGCAACAGGACATTACGCACGCATACATCGTCATGAAGATGGTCATGTTGAA
    ATGTTACGTGGTGTAGATAATAATAAAGATCAAACATACTTCTTGAATCAATTATCTCAA
    CAACAACTTTCAAAAGTGATGTTCCCAATTGGCGACATCGAAAAGAGTGAAGTGCGTCGA
    ATTGCTGAAGAACAAGGACTTGTTACTGCTAAGAAAAAAGATTCTACAGGCATTTGTTTT
    ATCGGCGAAAAAAACTTTAAAACATTTTTATCACAATATTTACCTGCACAACCGGGTGAT
    ATGATAACACTTGATGGTAAGAAAATGGGTAAACATAGTGGTTTGATGTATTACACAATA
    GGACAAAGACATGGATTAGGTATAGGTGGAGATGGCGATCCTTGGTTTGTTGTCGGTAAA
    AACCTAAAAGATAATGTTTTATATGTAGAACAAGGATTCCATCACGATGCATTATACAGT
    GATTACTTAATTGCTTCAGACTATTCATTTGTAAATCCAGAAGATAATGACTTAGATCAA
    GGTTTTGAATGTACAGCTAAATTTAGATATCGCCAAAAAGATACGAAAGTTTTTGTGAAA
    CGTGAAAACGACCATGCACTACGTGTTACTTTTGCTGAGCCAGTAAGAGCAATCACACCT
    GGACAAGCAGTTGTTTTTTATCAAGGTGATGTGTGTCTTGGTGGTGCAACAATTGACGAT
    GTGTTCAAAAATGAAGGTCAATTAAATTATGTTGTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1119

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_01726
  • symbol: SAOUHSC_01726
  • description:
  • length:
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

⊟Function[edit | edit source]

  • reaction:
    EC 2.8.1.13?  ExPASy
    tRNA-uridine 2-sulfurtransferase A [protein]-S-sulfanyl-L-cysteine + uridine34 in tRNA + ATP + reduced acceptor = a [protein]-L-cysteine + 2-thiouridine34 in tRNA + AMP + diphosphate + acceptor
  • TIGRFAM:
  • TheSEED  :
    • tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)
    Cofactors, Vitamins, Prosthetic Groups, Pigments Riboflavin, FMN, FAD Riboflavin, FMN and FAD metabolism Extended  tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)
  • PFAM:

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb:
  • DeepLocPro:
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP:
  • predicted transmembrane helices (TMHMM):

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt: Q2FXV6 UniProt
  • STRING: 93061.SAOUHSC_01726 STRING

⊟Protein sequence[edit | edit source]

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas [3] [4]
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:
    SAOUHSC_02494(rpsE)30S ribosomal protein S5  [5] (data from MRSA252)

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Roy R Chaudhuri, Andrew G Allen, Paul J Owen, Gil Shalom, Karl Stone, Marcus Harrison, Timothy A Burgis, Michael Lockyer, Jorge Garcia-Lara, Simon J Foster, Stephen J Pleasance, Sarah E Peters, Duncan J Maskell, Ian G Charles
    Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH).
    BMC Genomics: 2009, 10;291
    [PubMed:19570206] [WorldCat.org] [DOI] (I e)
  2. ↑ Anne Berscheid, Peter Sass, Konstantin Weber-Lassalle, Ambrose L Cheung, Gabriele Bierbaum
    Revisiting the genomes of the Staphylococcus aureus strains NCTC 8325 and RN4220.
    Int J Med Microbiol: 2012, 302(2);84-7
    [PubMed:22417616] [WorldCat.org] [DOI] (I p)
  3. ↑ Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
    A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
    Proteomics: 2015, 15(21);3648-61
    [PubMed:26224020] [WorldCat.org] [DOI] (I p)
  4. ↑ Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, Frank Schmidt
    A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.
    Sci Rep: 2017, 7(1);9718
    [PubMed:28887440] [WorldCat.org] [DOI] (I e)
  5. ↑ Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
    Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
    J Proteome Res: 2011, 10(3);1139-50
    [PubMed:21166474] [WorldCat.org] [DOI] (I p)
  6. ↑ 6.0 6.1 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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